Scyliorhinus canicula (smaller spotted catshark): 119972462
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Entry
119972462 CDS
T11175
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
scau03036
]
119972462 (smchd1)
03400 DNA repair and recombination proteins [BR:
scau03400
]
119972462 (smchd1)
Chromosome and associated proteins [BR:
scau03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
119972462 (smchd1)
DNA repair and recombination proteins [BR:
scau03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
119972462 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_6th
Ig_SMCHD1_8th
Ig_SMCHD1_4th
Ig_SMCHD1_2nd
Ig_SMCHD1_7th
HATPase_c_3
SMC_hinge
HATPase_c
Tiam_CC_Ex
Motif
Other DBs
NCBI-GeneID:
119972462
NCBI-ProteinID:
XP_038665122
LinkDB
All DBs
Position
10:complement(74399102..74616327)
Genome browser
AA seq
2033 aa
AA seq
DB search
MAAEQPLNVAVTPDSIPGGSAEKDGHKKKVVFIFDRRLGDSLEKCLDFSSWSTYAEFRTA
VCRAFDITAGNNFVITTTNRKEIKTQNFDKSVKDGTTLYILHSVDQILPSATKERIDFLP
HYDTLVKSGMYEYYASEGQTPLPFAFAELIDNSLSATANNKGIRNIQVRLLFDESQGKSA
VAVIDNGRGMTSKQLNNWAVYRLSKFTRTDDDIESDHSGYVRPPVVPRSLNSDISYFGVG
GKQAVFFIGQSTRMITKPADSQDVHELMLSKDDFEKKEKNKEAIYSGFIRNRKPTDSMHI
TSEDERFIHSLIVEEKDKTNFTAVVITGVQQAHVQYLKSYFHLWTRQLAHIYHYYIHGPK
GNDMTVAKEVVPFNNIEIEISMFEKGKVPKIVNLREIKDDMQTLFINTAADCFEFKAHVE
GEGVVEGVIRYHPFLYDKETYPEDVSCPFSKQNTTEDDEEDCYSVDKGARGKRPIFECFW
NGRLIPYTTVEDFEFCAPPKKRGLVALECYNRISGVLFTNDKFQVSTNKLTFMDLELKLK
DKNTLFTRVVNGQEQRMKIDREFTMWLKECHEKYDKQIKFSSYKGTITRSDLPSKRMQSP
WAVYAAIEWDGKTFKAGHLVKTIKTLPIIYGSIVRFLLYGDHEGDVYSTGGEVQIAVEPQ
ALYDEVKTIPISKLDRTVPTAAIKKYIEDEMARLPDQLSVTWPEGDELVLNERRPAGMPI
GALRIEILNKKGETMQKLPGTSHGGSKKLLVELKVIWHSATGDKEIVSHISQHGGKWPYW
FKKMENISKLGIYTLKLQVVLNESNADTYAGRPLPSRIFKFTVTEGKPDKFTVGLLDPPF
RIAVPFNIPLDLQDEFGHSTQSSSVIKPIVEASGLELHYEAFIEKGTSFIIKGVTARGYV
TNCQGKNFTLKVILPGLKEDSQTLKIRLLPGPPRELRIKPESNKVVIENGTTIPFQAEVL
DEAGNITAQPKLIVHCKFLGAPNLPVYTVDCSNTGTGILTGPVIHVQNIKKDQTLKAMIE
ISSCKDVAAVEKIIKLLPSTQVTKLQIFSIDGQKAIPIKHQEEIDWIAGDVIHHVIFRMY
DEGDRQIVVNSSIAEKIKVNWTPRINREHLIQGLLPDVKVPCSVKDVRYCQVSYQDDHVS
LESAFTVKPQPDEPRLLKCSLKGLSTVQMGEELQGEIHATLTDRHGNQIQTLTSSCVNLL
GVAGEGLDKSNLKFTWQENGKNVLVRGIKFIPGATGQKELCFAWRDFVDYVRIHLTAGPP
TQITILEWGNTEESLSVVNGKALDKPLVVQLCDAWGNPSPEPMIKIVLLKENGLKLSPVP
QLQKTDENGRANFGSFQIFAARGKYTLQTKAVINKSAVDGPVIRLNVVPDPNKPISLHVD
YDKNTTFVAGGFLTEFIVSVTSEDGSAMKNIKPGDLTMRLWRGQRPSSNPTILNCNKGRE
GDKEGYFSFRDKILPERIGVHTIQFVYSQDKTVLHSEQITFSVVPGEPVKLIPEEVPATP
TVSNVRSIAHRTLVKTLCLKILDEYNNVAGKDICGKLVVTIKSTTEDDCEIPQFQGKLSC
LEFELNQGSSDISNLVLAENSPGRDSAEYMLFFEPVISKLGKRKPLPPYILPFMFYNDFK
KQQQMTTLTKEKDQLSQSIVAYRSLFDTTNQLIGEMKCQSQEATAKETHLRNELRKQKIN
PAEISTIHGIDTVLKQMKIEKDRIFKQPRRMCSLSNYARSSGDILGKIAHLAMIEDDEVA
KVISWHMASDMDCVVTLTTDAARRIFDESQGRQQVLPLDSIYRKNLPDSNRPLPHMRNGK
CNFKPEGNPIFARELLIFSENMEQCRTVFGMLLGDTIILDDLNAANQYRKEVVKITHCPT
LLTRDGDRIRSNGKFGGLQNKAPQMDKLRGLVFGAPLPKAYHMLNSHIDLIQQYRSALIK
LNNVKQELDLQLKYLGSPEMTLKHKELNDQENQLKQIEKQLGMTPTRTTSACSPKTLALD
MPDGQTPSKKMRRESAKKIYSAEEWVSTPLRKSQQTPSGSDTNGSTWSRKRKA
NT seq
6102 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagagcagccgcttaatgtggcggtgactccggactcaatacctgggggcagc
gcagagaaagacgggcacaaaaagaaggtggttttcatcttcgatcgccgcttgggagac
tcgctggagaaatgcctggacttcagcagctggagcacgtacgccgagttcaggaccgcg
gtgtgtcgggcttttgatattactgcgggaaataattttgtaattacaacaacaaatagg
aaagaaatcaaaactcaaaactttgataaaagtgtcaaagatggcaccactttgtacata
cttcactcagtcgaccaaatactgccctcagcaacaaaggagcgaattgactttcttcct
cactatgatacattggttaaaagtggcatgtatgaatactatgccagcgaagggcagact
ccattgccatttgcctttgctgaactgatagataattcattatctgcgacagcaaacaac
aaaggaattcgtaacatacaggtccgactgttgtttgatgaatctcaaggtaaatcagca
gtagctgtaattgacaacggcaggggaatgacatctaaacagcttaataattgggctgtg
tatcgactgtccaagttcaccagaacagatgatgacattgaaagtgatcattcagggtat
gttcgtccacctgtggtgcctcgcagtctcaatagcgacatttcctattttggtgttggt
gggaaacaagccgttttcttcattggccagtctactagaatgataactaaaccagcagat
tctcaggatgtacatgaattaatgctttctaaagatgattttgaaaagaaggaaaaaaac
aaagaagcaatatatagtggattcatccgaaacagaaagccaactgattcaatgcacatc
accagtgaagatgaacgatttattcatagtctcattgtggaggaaaaggacaagacaaac
tttaccgcagtagtaatcacaggagttcagcaagctcatgtacagtacctgaaaagctat
tttcatctttggacacgacagttggcccacatataccactactatattcatggacctaaa
ggaaatgatatgacggttgctaaagaagtagtaccctttaacaacattgaaattgagatc
tcaatgtttgagaagggaaaagtccctaagattgtgaatctaagggaaataaaagacgac
atgcagactctcttcatcaacacggctgcagactgctttgaatttaaagcgcacgttgaa
ggggaaggagttgtagagggagtgatacgttatcatcctttcctgtatgataaagaaaca
taccctgaagatgttagctgtccgttcagtaagcaaaatacgactgaggatgatgaggaa
gactgctattctgttgataaaggggctagaggaaaaaggccaatatttgaatgcttttgg
aatggaagattgataccctatacaacagtagaagattttgaattttgtgcgcctcccaag
aaaagaggactggtggcactggaatgttacaacagaatctcgggtgtacttttcaccaat
gataaatttcaggtcagcaccaacaagttgacattcatggatttggaactgaagctgaaa
gataagaacacacttttcacacgtgttgtgaacgggcaagagcaaagaatgaagatagat
cgagaatttactatgtggcttaaagaatgccatgagaaatatgacaagcaaataaagttc
agctcttataaaggcacaatcacaagaagcgatctaccatctaaaagaatgcagagtcct
tgggctgtatatgcagctattgagtgggatggcaaaaccttcaaagcaggacacttggtt
aaaactatcaaaaccttgccaataatttatgggagcatagttcgttttcttctttacggt
gaccatgaaggtgatgtgtattccactggaggagaagttcaaatagctgtggaaccccag
gctttgtatgatgaggtgaagaccattccaatctcgaagttggatagaactgtacctact
gctgcgatcaagaaatatatagaagatgaaatggcaaggcttcctgatcaactatctgtc
acctggccagaaggagatgaacttgttctaaatgaaaggagaccagcaggaatgcccata
ggtgctttgagaatagaaattctgaataaaaaaggcgaaactatgcaaaaacttccagga
acaagtcatggtggatcaaaaaagttgttggttgagctgaaagttatctggcattctgcc
actggtgacaaggaaatagtttctcacatcagtcaacatggtggcaaatggccatattgg
tttaaaaagatggaaaatattagcaaacttggaatctacacattaaaactgcaagtagta
ttgaatgaaagtaacgcagatacttatgcaggaaggcctcttccaagcagaatcttcaaa
ttcactgtcacagagggaaaacctgataaatttacagttggattgctggatcctccattt
cgcattgctgtgcctttcaacattcctctagatttgcaagatgaatttgggcattctaca
caatcatcttctgttatcaagccaattgtggaagcaagtgggttggagctacattatgaa
gcttttatcgaaaaaggaacaagtttcatcattaaaggtgtaactgccaggggttacgtg
accaattgccaaggcaagaacttcactcttaaagtaatcttacctggtttgaaggaggat
tcacaaactttaaaaattaggctattgcctggtccaccacgtgaactgaggattaagcca
gaatctaataaagtagttattgaaaatggaaccactataccgttccaagctgaagtgcta
gatgaagcagggaacattacagcacagcccaagttgatagttcattgcaagtttcttggt
gccccaaatttgcctgtgtatactgtagattgtagtaacactggtactggaatcttaact
ggacctgtgatacatgtccaaaatatcaagaaggaccaaacgttgaaggcaatgattgag
atatcgagctgtaaagatgtagcagcagtggagaagataattaaattgctccccagcact
caagtcaccaagctccagatcttcagcatagatggacaaaaggcaattcctatcaaacat
caggaagaaattgactggattgctggagacgtaatccaccacgttatctttcggatgtac
gatgagggagatcggcaaattgttgttaattcatctatagctgagaaaattaaggttaac
tggacaccacggataaatagagaacatttaattcaaggattgttgcctgatgtgaaagta
ccgtgttctgttaaagatgtgcgttattgtcaagtctcataccaagatgatcacgtttca
ctggaaagtgcatttacagtcaagccacagccagatgaacctaggcttttaaaatgttcg
ttgaaaggattaagcactgttcagatgggtgaagagctgcaaggagaaatacacgcaaca
cttactgatcgccatggcaatcagattcaaaccctgacatcgtcttgtgtaaatttattg
ggagtagctggagaaggacttgacaagagtaatctgaagttcacgtggcaggaaaatggc
aagaatgtgcttgttcggggaataaagtttatacctggagccactggtcaaaaagaactt
tgttttgcttggcgtgattttgtggattatgtaagaattcacctgactgcaggaccccca
acacaaattaccatccttgaatggggaaatacagaagagtccctctctgttgtcaatggt
aaggctcttgataagcctttggttgtccagctatgtgatgcttgggggaatccttctcct
gaacctatgattaaaattgtcctgctaaaagaaaatggcctaaagctgtcaccagtacca
caactgcagaaaactgatgaaaatggaagggcaaattttggttcgtttcagatctttgct
gcaaggggaaaatacacattgcaaactaaagccgtcattaataaaagtgcagtggatggt
ccagtgatcagattgaatgtagtaccagaccctaacaaacctatcagcttgcatgtagac
tacgacaaaaatacaacttttgttgctggtggatttttaacagagttcatagttagtgtt
acttctgaagatggtagtgcaatgaaaaatatcaaaccaggcgatcttaccatgagactc
tggaggggtcagcgaccatcatccaatcccacaattctaaactgcaacaaaggacgggaa
ggtgacaaagagggatatttctctttcagggataaaatccttccagagcggataggagta
cataccattcagtttgtatattcacaagacaagaccgtgcttcatagtgaacagattact
ttctctgtggtaccaggtgaaccagtgaaattaataccagaagaagtcccagccactcct
actgtctcaaatgttcgcagtatcgcccatcgtacattggtcaaaactttgtgtctgaag
attctggatgaatataacaatgtagctggaaaggatatttgtggcaagttggtggttact
attaaaagtacaacggaggatgattgtgaaattcctcagtttcaaggaaaactcagttgc
ttggagtttgaactcaaccaaggatcttctgacatttcaaacttggtgctggcagaaaac
agtcctggcagagatagcgcagaatatatgctgttttttgaaccagtcatttcgaaactt
ggcaagaggaaacctttacctccatacattttaccttttatgttttataatgattttaag
aaacagcagcagatgaccaccttgacgaaagagaaggatcaactttcccaatccattgtc
gcatataggagtttgtttgacaccaccaaccagctaatcggtgaaatgaagtgtcaatca
caagaagctacagcaaaggaaactcacctaagaaatgaacttcgaaagcagaaaataaat
cctgctgaaatctctactatccacggtattgatactgttctcaagcagatgaagattgag
aaagacaggatattcaagcagcccagaagaatgtgctctctgtctaattatgctaggagc
agtggtgacattttaggaaagattgcacacttggcaatgatagaggatgatgaggtagcc
aaggttatctcttggcatatggctagcgatatggactgtgtggttactttaaccactgat
gctgctcgacgtatcttcgatgaaagtcaggggcgccaacaagtactaccgcttgattcc
atatatagaaaaaatcttccagacagtaacaggcctttacctcacatgcgaaatggaaaa
tgtaatttcaaacctgaggggaaccctatatttgcccgggaattacttattttttctgaa
aatatggaacaatgtcgcacagtgtttggaatgcttcttggagatacaataattctggat
gacttaaatgctgccaatcagtatagaaaagaggttgtgaaaattacccattgccctact
ttgctaactagagatggtgacagaatccggagcaatggaaagtttggaggccttcaaaac
aaggcaccacaaatggataaacttcgaggactggtgtttggagctcctctaccaaaagct
taccatatgctgaattctcatattgatcttatccagcaatatcgctctgccctgatcaag
ctgaataatgtcaaacaggaactggatctgcaactgaagtatcttggctcaccagaaatg
accctaaagcacaaggagctcaatgaccaagagaaccaactaaagcagattgagaagcag
ctagggatgactccaacaagaacaacttctgcttgcagtcctaaaacactggctctagat
atgcctgatgggcagactccaagcaaaaaaatgcgaagagaaagtgcaaagaaaatatat
agtgcagaagagtgggtttcaacacctttaaggaaatcgcagcaaacgccttcaggatca
gacacaaatggaagtacttggtcacggaaaagaaaggcttaa
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