Scyliorhinus canicula (smaller spotted catshark): 119976760
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Entry
119976760 CDS
T11175
Name
(RefSeq) class I histocompatibility antigen, F10 alpha chain-like isoform X1
KO
K06751
MHC class I antigen
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04144
Endocytosis
scau04145
Phagosome
scau04218
Cellular senescence
scau04514
Cell adhesion molecules
scau05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
119976760
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119976760
04145 Phagosome
119976760
09143 Cell growth and death
04218 Cellular senescence
119976760
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
119976760
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scau04147
]
119976760
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
scau00537
]
119976760
Exosome [BR:
scau04147
]
Exosomal proteins
Proteins found in most exosomes
119976760
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
scau00537
]
Antigens
119976760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MHC_I
C1-set
MHC_I_3
Ig_3
Syndecan
Motif
Other DBs
NCBI-GeneID:
119976760
NCBI-ProteinID:
XP_038673428
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Position
13:complement(32287422..32423485)
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AA seq
345 aa
AA seq
DB search
MIGLMALLLLCGEVSAGSHSLRYFLTGMTPMPGFREFVGVGSVDNVQFILYDGDRKDLIP
REQWMVFSEGREFWERKKFLAREQENYFKAYVLTLMSRTNQSGGIHVYQMMNGCDLRDDG
STSAFAQYGWDGRDFISFDKSNMVWVTPVPWGESFKNRWDKNNVNNQRWKHYLEVECIEW
LRKYLEYGQRELTVVAPIVSFTRLGDSNRLPCVVTGFYPQAIEVNLCRDGVVIDETLSSG
ILPNHDRTYQIRKWVEFDPEDQAEYSCRVEHSGLNETLVVIYMPKSHSQVTIGIVLGILG
LLIALIIVAVVIYKKKGRGKSDYNPTNTSDKGGSSSSSSELIGIS
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgattggactgatggcgctgctccttctgtgtggagaggtgtctgcaggctctcactct
ctgcggtatttcctcacgggtatgactccaatgcctggattccgggaatttgtgggtgtc
ggttctgtggacaatgtccagttcattctgtatgacggcgatcggaaggacttgattccc
agagagcaatggatggtcttcagtgaggggcgtgagttctgggaacggaagaagtttctc
gcacgggagcaggagaattatttcaaagcttatgttttgaccctgatgtccaggaccaac
cagtcaggagggatccacgtttaccagatgatgaatggctgtgacctgagggatgatggg
agcacaagtgcattcgcccaatacggctgggatggacgagatttcatcagcttcgacaag
agtaacatggtgtgggtgaccccggtcccctggggagagagcttcaaaaacaggtgggac
aagaacaacgtcaataaccagcgctggaaacattacctggaggtggagtgtatcgagtgg
ctgaggaaatacctggagtatggacagagggaactgacagtcgttgcccccatcgtgtcc
tttacccgtctgggtgattctaaccggctgccctgtgtcgtcaccgggttttaccctcaa
gccatcgaggtgaatctgtgcagagatggagtggtgattgatgagaccctgtccagtggg
atcttacccaatcacgacaggacctaccagatccggaaatgggtggagtttgatccggag
gaccaggctgagtattcctgtcgggtggaacacagcggactgaatgagacactggtggtg
atttatatgccaaagtctcactcccaggttaccattgggattgtgctcgggatcctgggg
ctgctcatcgctctcatcattgtggctgtcgtcatctacaagaagaaagggagagggaag
agcgactacaatcctacaaacacttctgataaagggggttcttcatccagctcctccgaa
cttatcggtataagttga
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