KEGG   Scyliorhinus canicula (smaller spotted catshark): 119979405
Entry
119979405         CDS       T11175                                 
Symbol
smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
scau  Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:scau00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119979405 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:scau03041]
    119979405 (smndc1)
Spliceosome [BR:scau03041]
 Complex A
  U2 snRNP components
   U2 related factors
    119979405 (smndc1)
 Complex B
    119979405 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    119979405 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR SGF29_Tudor SH3_Hsr9 T3SS_needle_F DUF2067
Other DBs
NCBI-GeneID: 119979405
NCBI-ProteinID: XP_038677509
LinkDB
Position
16:complement(16872842..16895578)
AA seq 238 aa
MSDELAKQLASYKAQLQQVEAALSSDADNEDLLKLQKDLQEVIELTRDLLSNQPSVAAAN
ADSSTNSVPSHKWKTGDKCLAIWNEDGQLYEAEIEEIDQENGTAAITFAGYGNADVLPLV
NLKPVEEGNDSEEQGGDKPKSKKEMVAQQREYKKKKALKKAQRMKELEQEREEQKVKWQQ
FNNRAYSKNKKGQVKKSIFASPESVTGKVGVGTCGIADRPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagatgagctggcaaagcagctggccagttataaggcacaacttcagcaagtagaa
gctgcactgtcttctgacgcagacaatgaagatctccttaaattacaaaaagatttgcag
gaagtaatagagctgaccagagacctgctgtcaaaccagccttctgttgctgcagccaat
gctgatagctcgacaaattccgttcccagtcataaatggaagactggtgacaagtgcctg
gccatttggaatgaggatggacaattgtatgaagcggagattgaagagattgaccaggaa
aatggcacggctgccatcacctttgctggatacggtaatgctgatgtgctccccttggtc
aacctgaaaccagttgaagaaggaaacgattctgaagaacagggtggcgacaaacccaaa
tcgaagaaggaaatggtcgcccagcagagggagtacaagaagaaaaaagcattaaaaaag
gcccagcgaatgaaggagcttgaacaggagcgagaggagcaaaaagtaaaatggcagcag
tttaataacagagcctattccaagaacaaaaaaggacaggtaaagaaaagtatttttgcc
tcaccagagagtgtgactggaaaagttggagttggcacatgcgggatagcagacagaccg
atgactcagtaccaagacacgtccaaatacaatgtgcggcatcttatgccacaataa

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