Streptomyces cathayae: PYS65_10925
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Entry
PYS65_10925 CDS
T09946
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scay
Streptomyces cathayae
Pathway
scay03030
DNA replication
scay03410
Base excision repair
scay03420
Nucleotide excision repair
scay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PYS65_10925 (ligA)
03410 Base excision repair
PYS65_10925 (ligA)
03420 Nucleotide excision repair
PYS65_10925 (ligA)
03430 Mismatch repair
PYS65_10925 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scay03032
]
PYS65_10925 (ligA)
03400 DNA repair and recombination proteins [BR:
scay03400
]
PYS65_10925 (ligA)
Enzymes [BR:
scay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PYS65_10925 (ligA)
DNA replication proteins [BR:
scay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PYS65_10925 (ligA)
DNA repair and recombination proteins [BR:
scay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PYS65_10925 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PYS65_10925 (ligA)
MMR (mismatch excision repair)
DNA ligase
PYS65_10925 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PYS65_10925 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
WGD40616
UniProt:
A0ABY8K131
LinkDB
All DBs
Position
complement(2445284..2447479)
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTSVPAEARERHAKLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRELEALEEA
YPELRTPDSPTQKVAGAYETEFTSVQHVSRMLSLDNTFNDDDLAAWVERIHKELGEQRFH
FLCELKVDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLEGDEVPGLVE
IRGEVFFPMEKFQGLNARLVEAGDKPFANPRNAAAGSLRQKDPRVTAGRPLHMVVHGIGA
LEGFTGPTRLSEAYDLLKTWGLPTSPHNRVVDGLAGVREFIAYYGENRHSVAHEIDGVVV
KLDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTRLVNIRVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECP
ECGTPLRAMKEGDVDLRCPNARACPAQLRERLFYLAGRRALDIEHFGYVAAAALTRPLEP
EDPPLRDEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFANQEGEPRKNA
VAMLANIEAAKERPLARVLTSLSIRHVGPVAAEALAREFRSIDRIEQATEEELAGTEGVG
GIIATSLKQWFAEEWHREIIRKWRAAGVRMEDEGSGEDEGPRPLAGLTVVVTGTLEHHTR
DGAKEALQARGAKVTGSVSKKTSFVVVGDNPGSKHDKAMQLKVPVLNEEGFTVLLEEGPE
AASDMALQAEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggcgggtgacaagcaggcggagacgacgagcgtgccggccgaggcacgggagcggcac
gccaagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaacgacgcgccc
gtcgtcagcgacgccgagttcgaccggctgctgcgggagctggaggcgctggaggaggcg
tatccggagctgcgcacgcccgactcgccgacccagaaggtcgccggggcgtacgagacg
gagttcacctccgtgcagcacgtctcgcggatgctctccctcgacaacaccttcaacgac
gacgacctcgccgcctgggtcgagcgcatccacaaggagctgggcgagcagaggttccac
ttcctgtgcgagctgaaggtcgacggcctcgccgtcaacctcacctacgagcggggccgg
ctggtccgcgcggcgacccggggcgacggccgcaccggtgaggacatcacgcccaacgtc
cgtaccatcgccgagatcccggaccggctggagggcgacgaggtccccggcctcgtggag
atccgcggcgaggtcttcttcccgatggagaagttccaggggctcaacgcccgtctggtg
gaggccggtgacaagcccttcgccaacccccgcaacgcggcggcgggttcgctgcgccag
aaggacccgcgggtcaccgccggccgtccgctgcacatggtcgtccatggcatcggtgcc
ctggaggggttcaccggaccgacccggctctccgaggcgtacgacctgctgaagacctgg
ggcctgcccacctccccgcacaacagggtcgtcgacggtctcgccggcgtacgggagttc
atcgcgtactacggcgagaaccggcactccgtggcgcacgagatcgacggagtggtggtc
aagctcgacgagatcccgctccagggccgtctcggctccacctcgcgcgccccgcgctgg
gccatcgcgtacaagtacgcgcccgaggaggtcaacaccaggctggtcaacatccgcgtg
ggggtgggccgtacgggcagggtcacgccgtacgcgcaggtcgagccggtcaccgtggcc
ggttccgaggtggagttcgccacgctgcacaaccaggacgtggtcaaggccaagggcgtc
ctcatcggtgacacggtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggc
ccggtcgccgacctgcgggacggcagcgagcgtgagttcgtgatgccggccgagtgcccg
gagtgcggcacgccgctgcgcgcgatgaaggagggcgacgtcgacctgcgctgccccaac
gcccgggcctgcccagcccagttgagggaacggctgttctacctcgcgggccgcagggcg
ctggacatcgagcacttcggctatgtcgccgcggcggcgctcaccaggccgctggagccc
gaggacccgccgctgagggacgagggcgacctgttcgacctcaccgtcgagcagttgctg
cccatcaaggcgtacgtcctcgaccaggacagcggtctgcccaagcgggacccgaagacg
ggcgaggagaagatcgccacggtcttcgccaaccaggagggcgagccgaggaagaacgcg
gtcgcgatgctggcgaacatcgaggcggccaaggagcgcccgctcgcacgcgtcctcacc
agcctgtccatccggcacgtcggcccggtcgcggccgaggcgctggcccgggagttccgg
tccatcgaccggatcgagcaggccaccgaggaggagttggccggtaccgagggcgtcggc
ggcatcatcgccacctccctcaagcagtggttcgccgaggagtggcaccgcgagatcatc
cgcaagtggcgggcggccggtgtccgcatggaggacgaggggtccggcgaggacgagggc
ccgcgtccgctggcgggactgacggtcgtggtgaccggcaccctggagcaccacacccgg
gacggcgcgaaggaggcgctgcaggcccggggagcgaaggtgaccggttcggtctcgaag
aagacgtccttcgtggtcgtgggagacaaccccgggtcgaaacacgacaaggcgatgcag
ctcaaggtgccggttctgaacgaggagggcttcaccgtccttctcgaggaagggccggaa
gcagcctccgacatggcacttcaggccgaggagtag
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