Sellimonas catena: ACI3DN_01435
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Entry
ACI3DN_01435 CDS
T10804
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scaz Sellimonas catena
Pathway
scaz03030
DNA replication
scaz03410
Base excision repair
scaz03420
Nucleotide excision repair
scaz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACI3DN_01435 (ligA)
03410 Base excision repair
ACI3DN_01435 (ligA)
03420 Nucleotide excision repair
ACI3DN_01435 (ligA)
03430 Mismatch repair
ACI3DN_01435 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scaz03032
]
ACI3DN_01435 (ligA)
03400 DNA repair and recombination proteins [BR:
scaz03400
]
ACI3DN_01435 (ligA)
Enzymes [BR:
scaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACI3DN_01435 (ligA)
DNA replication proteins [BR:
scaz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACI3DN_01435 (ligA)
DNA repair and recombination proteins [BR:
scaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACI3DN_01435 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACI3DN_01435 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACI3DN_01435 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACI3DN_01435 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
Nlig-Ia
HHH_2
HHH_5
Lar_restr_allev
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
XKQ71999
LinkDB
All DBs
Position
288682..290679
Genome browser
AA seq
665 aa
AA seq
DB search
MNTADKIKELVQTLNRHRHAYYNLNTPEISDAEYDRMYDQLKKLEKETGIIYSNSPTQTV
GYPPVSELEKVPHPHPLLSLDKTKQVEDLCRFCGDHAALLMLKLDGLTVKLTYENGRLAE
ASTRGDGEIGEDITHNIPAFENVPLAISYKERLVVTGEAFIHRKDFERLNTTLRDKNGEP
YKNARNLAAGSVRSLDPENCKGRWVTFLPFNVLEGLDEGENSNSREERLYQLSKLGFGSC
PYIPLNPDQISPEYLQLRIQDLKEKAEALDLPIDGMVLIFDDLAYSASCGRTGHHYKDGL
AYKFEDETYETILRSIEWTPSRFGELAPVAVFDTVEIDGCSVSRATLHNLTFIRELELVP
GCRILVSKRNMIIPHVEENLDRGHYLDAAPAICPCCGAPTELHRKKGEKGRIIETVHCSN
PSCESQQLKKFVHFVCRKAMNIEGLSESTLEKFLNLGYLQTFHDIYHLDQHREEIIRLEG
FGEKSFDRLWNAIQASRNTTFVRYLVSMDIPMVGRTKSRVLDTVFSGSLDAFRAAATDDY
DFTQLEDFGATLNRNIHDWFTDEENLMLWDTLQKEFTFEERKEETTMAKNTEFAGKTIVA
TGKLENFTRSEINDQILALGAKPGSSVSKKTDYLICGEKAGSKLAKAQALGVTILSEAEF
LAMIA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagcagacaagatcaaggaactggttcagacgctcaaccggcaccggcacgcc
tactataacctgaacacaccggaaatctccgatgcggagtatgaccggatgtatgaccaa
ctgaaaaagctggagaaggaaacagggatcatctactccaattccccaacccagaccgta
ggctacccacccgtcagcgaactggagaaagtaccacatccccatccgcttctgtccttg
gataagacaaagcaggtggaagatttatgccgtttttgtggcgatcacgcagctttgctt
atgctgaagctggatggccttacggtaaaactcacctacgaaaacggcagactggcagag
gcatccacacggggagacggggaaatcggggaagatatcacccataacattcccgccttt
gagaatgtaccactcgctatctcttataaagagcggctggttgtcaccggggaagccttc
atacacagaaaggattttgaacggctgaataccacactccgggacaagaacggggaacct
tataaaaacgcccggaacctggctgccggatctgtgcggagcctggatccggagaactgt
aaaggccgctgggtcaccttccttcccttcaacgtactggaaggactggacgagggagaa
aacagcaatagccgggaggaacgcctgtaccagttatccaaactggggtttggctcctgc
ccgtatattcccctcaatccggatcagatttcgccggaatatctgcagctgcggatccaa
gatctgaaggagaaagcagaagcactggatcttcccattgacgggatggtactgattttc
gatgacctggcatattccgcaagctgcggaaggaccgggcatcactacaaggacgggctt
gcctacaaattcgaggatgaaacctacgagactatccttcggagtattgaatggacgcct
tcccgcttcggggaactggcacctgtggcagtctttgacacagtggagattgacggctgc
tccgtatccagagccacgcttcataacctcacctttatccgggaactggagctggtgccg
ggatgccgtatcctggtatccaaacggaacatgatcattccccatgtagaggagaacctg
gaccgtggacactatctggatgcagcacctgctatctgcccgtgctgcggcgctccgaca
gaactccatcgaaaaaaaggagaaaaaggacggatcattgaaaccgtacactgcagcaat
ccatcctgtgaaagccagcagttgaaaaaattcgtccatttcgtatgccggaaagccatg
aatattgaaggtttaagtgagtctaccctggagaaatttttaaacctgggataccttcag
accttccatgacatctaccatctggatcagcaccgggaagagatcatccggctggaaggg
ttcggggagaaatccttcgaccggctctggaacgcaatccaggccagccgcaacaccacc
tttgtccgctatctggtcagcatggatattcccatggtaggccgtacaaaaagccgggta
ttggataccgtattctccggtagtctggatgccttccgggcggctgccaccgatgactat
gatttcacacagttagaggattttggcgccacactgaaccggaacattcacgactggttt
acggatgaagaaaatctgatgctctgggacacgttacagaaagaatttacatttgaagaa
agaaaggaagaaaccactatggcaaaaaatactgaatttgcaggaaagactatcgtagca
accggaaagctggaaaactttacccgctcagagatcaacgaccagatcctggcgcttggc
gcaaagccgggcagctcggtatccaaaaagaccgactacctgatctgcggggaaaaagct
ggcagtaagctggccaaagcccaggctcttggcgtcacgatcctgtcagaagcagagttt
ttagcaatgattgcataa
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