Sellimonas catena: ACI3DN_11110
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Entry
ACI3DN_11110 CDS
T10804
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scaz Sellimonas catena
Pathway
scaz03030
DNA replication
scaz03410
Base excision repair
scaz03420
Nucleotide excision repair
scaz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACI3DN_11110 (ligA)
03410 Base excision repair
ACI3DN_11110 (ligA)
03420 Nucleotide excision repair
ACI3DN_11110 (ligA)
03430 Mismatch repair
ACI3DN_11110 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scaz03032
]
ACI3DN_11110 (ligA)
03400 DNA repair and recombination proteins [BR:
scaz03400
]
ACI3DN_11110 (ligA)
Enzymes [BR:
scaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACI3DN_11110 (ligA)
DNA replication proteins [BR:
scaz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACI3DN_11110 (ligA)
DNA repair and recombination proteins [BR:
scaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACI3DN_11110 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACI3DN_11110 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACI3DN_11110 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACI3DN_11110 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
Flavodoxin_1
HHH_8
DUF7307
DUF4796_N
HHH
CsgG
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
XKQ70281
LinkDB
All DBs
Position
2237913..2239895
Genome browser
AA seq
660 aa
AA seq
DB search
MTKIQGSIEEKKQRMTELVDLLNQAGRAYYQEAREIMSNFEYDRLYDELLSLEEELQTTL
AASPTVHVGYEVVSELPKERHERPMLSLDKTKEVGRLKEFLGNQTALLSWKMDGLTIVLT
YRDGALFKAVTRGNGEIGEVVTNNARVFKNIPLKIPYQGELILRGEAVIRYDDFERINEE
IEDVDAKYKNPRNLCSGSVRQLNNEITAKRNVRFYAFSLVRADGVDFENSRKRQMEWLKE
QGFETVEYHMVNAGTIEEEVAWFADQIQKNEVPSDGLVLLYDDIAYGQSLGSTAKFPRDS
FAFKWADEIRETTLREIEWSPSRTGLINPVAIFDPVELEGTTVSRASVHNISIMEELELG
VGDRIQVYKANMIIPQIAENLTRSGVRDIPETCPVCSGKTEVRQILNAKALYCTNPQCQA
KQIKAFTLFVSRDAMNIDGLSEATMEKLIGKGFIHEFADIYHLDEHREEIQEMDGFGEKS
CQNLLDSIEASRETTLSRLIYALGIENVGAATAKLICRQFDDDPEKIADADREALSRIQG
IGDVIAGTFTEYFQDPEKRARYENLLKELHLQKEERQEQQSFAGINFVITGSVTHFKNRN
EVKEEIEKRGGKVTGSVTSKTNYLINNDTESTSSKNRKAKELGIPILSEEDFLDMLKNEG
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaatacagggaagcatagaagaaaagaagcagaggatgaccgagcttgtcgat
ctgttgaatcaggcaggacgcgcctactatcaggaagcgcgggagatcatgagcaacttt
gagtatgacaggctttatgacgaactgctttcgctggaggaggagctccagacgaccctt
gcggcaagcccgacggtgcatgtcggatacgaggtggtcagcgagcttccaaaagaacgg
cacgagcgtccgatgctctctttggacaagaccaaggaggtgggccgtctaaaagaattt
ctgggaaaccagactgccctgctttcctggaaaatggacgggcttacgattgtcctgacc
taccgggacggggcgctttttaaggcggtcaccagaggaaacggagaaatcggggaggtt
gttaccaacaatgcccgggtgttcaaaaacattccgttaaagattccttatcagggagaa
ctgattctccgtggcgaggcggtgatccgttatgatgattttgaacggatcaacgaggaa
atcgaggatgtggatgcgaaatacaaaaatccgcggaatctttgcagcggttccgtgcgg
cagctgaataatgagatcacggcaaagcgaaatgtccgcttttatgccttttcccttgtg
cgggcggatggcgtagactttgagaactccagaaaacgccagatggagtggttaaaagaa
cagggctttgagactgtagaatatcatatggtaaatgcaggcacgatcgaggaagaagtg
gcctggtttgctgatcagattcagaaaaatgaagtgccgtccgacgggctggtgcttctg
tatgacgacattgcttacggccagtctttaggaagtactgccaaattcccccgggattcc
ttcgcttttaaatgggcggatgaaatccgggagacgacgcttcgggagatcgagtggagt
ccgtccaggacagggctgattaatccggtggctattttcgatccggtagagctggaggga
acgaccgtttccagagccagcgtccacaatatcagcattatggaggaactggagctgggc
gtcggggaccggattcaggtgtacaaggccaatatgattatcccgcagatcgcggaaaat
ctgaccagaagcggagtacgggacattccggaaacgtgtccggtgtgcagcgggaagact
gaggtccggcagatcctgaatgcgaaagcgctctactgtacgaatccgcagtgtcaggca
aaacagatcaaggcattcaccctttttgtcagccgggatgccatgaatattgacgggctt
tctgaggcgaccatggaaaagctgatcggaaagggattcatccatgagtttgcggatatc
taccacctggatgaacaccgggaggagattcaggagatggacggtttcggagaaaagtcc
tgccagaatctgctggacagcattgaagcgtccagagagacgacactttccaggctgatc
tacgcccttggtattgaaaacgtgggggcggccacggcaaaactgatttgcagacagttt
gatgacgatccggaaaagattgccgatgcagaccgggaggcattgagccggattcaggga
atcggggatgttattgctggaacatttacagagtattttcaggatccggaaaagagagcc
cggtatgaaaatctgttaaaggaacttcatctgcaaaaggaagagcggcaggagcagcag
agctttgccggaatcaattttgtcattaccggatcggttacacattttaaaaacagaaac
gaagtcaaggaagagattgagaaacggggcggtaaggtgacaggttctgtaacatccaaa
acaaactacctgatcaacaatgacaccgaatccacttcctccaaaaaccggaaggcgaaa
gagctcggaattccgatcctttcggaggaagattttctggatatgctgaaaaacgaggga
taa
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