Streptomyces scabiei: SCAB_27251
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Entry
SCAB_27251 CDS
T01187
Name
(GenBank) putative DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scb
Streptomyces scabiei
Pathway
scb03030
DNA replication
scb03410
Base excision repair
scb03420
Nucleotide excision repair
scb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCAB_27251
03410 Base excision repair
SCAB_27251
03420 Nucleotide excision repair
SCAB_27251
03430 Mismatch repair
SCAB_27251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scb03032
]
SCAB_27251
03400 DNA repair and recombination proteins [BR:
scb03400
]
SCAB_27251
Enzymes [BR:
scb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCAB_27251
DNA replication proteins [BR:
scb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCAB_27251
DNA repair and recombination proteins [BR:
scb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCAB_27251
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCAB_27251
MMR (mismatch excision repair)
DNA ligase
SCAB_27251
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCAB_27251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
CBG69827
UniProt:
C9Z5B8
LinkDB
All DBs
Position
complement(3106391..3108610)
Genome browser
AA seq
739 aa
AA seq
DB search
MAGDKDAQPTSVPAEAAVPAEAREKHARLAEQIEEHRFRYYVKDAPVVSDAEFDELLRTL
EALEDEYGELRTPDSPTQKVAVEYETDLAEVEHRERMLSLDNVFDDEGLAAWAERVAKDV
GTTDYHLLCELKIDGLAVNLTYEDGRLTRAATRGTGRTGEDITPNVRTIAEIPHRLKGDR
VPRLVEIRGEVYFPMEAFQGLNERRVAAGEKPYANPRNSASGSLRQKDPKVTATLPLHMV
VHGIGALEGFDGGFTRLSEAYDLLRSWGLPTAEHNRVVDDLDGVREFIAYYGENRHSVAH
EIDGAVVKLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLIDIKVGVGRTGRVTPYAQ
VEPVTVAGSEVEFATLHNQEVVKAKNVLIGDTVVIRKAGDVIPEILGPVVDLRDENETRP
FVMPTECPECGTPLRPMKEGDIDLRCPNARSCPAQLRERVSYLAGRECLDIEHFGGVAAA
ALTRPLEPADPPLVDEGDLFDLTVEKLLPIKAYVLDADSGLPKHDPKTGEPKVVTVFANQ
KGEPKKNTLALLQKIEEAKSRPLARFLNGLSIRHVGPVAAQALAREFRSIDRIEQATQEE
LTAVDGVGAIVAKALEEWFAEEWHREIIRKWKAAGVPLEDRGAGEDEGPRPLEGLTVVVT
GTLEHHTRDGAKEALQNRGAKVTGSVSKKTSFVVVGENPGSKHDKAMQLKVPVLNEDGFA
VLLEQGPDAAAEVALPIEE
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaaggacgcacagcccacatcggtgcccgccgaggcggcggtgcccgcc
gaggcacgcgagaagcacgcgcggctcgccgaacagatcgaggagcaccgcttccggtac
tacgtgaaggacgcccccgtcgtcagcgacgcggagttcgacgaactcctgcgcaccctg
gaggcgttggaggacgagtacggcgagctgcgcaccccggactcgccgacgcagaaggtc
gccgtcgagtacgagacggacctcgccgaggtggagcaccgcgagcgcatgctctccctc
gacaacgtcttcgacgacgaagggctcgcggcctgggccgagcgcgtcgccaaggacgtc
ggcaccaccgactaccacctgttgtgcgagctgaagatcgacgggctcgcggtgaacctg
acctacgaggacggcaggctcacccgggccgccacccgcggcaccggccggaccggcgag
gacatcacgcccaacgtcaggacgatcgcggagatcccgcaccggctgaagggcgaccgc
gtcccgcggctcgtcgagatccgcggcgaggtctacttcccgatggaggcgttccagggt
ctcaacgaacgccgggtggcggcgggcgagaagccgtacgccaacccccgcaactccgcc
tcgggttcgctgcgccagaaggaccccaaggtcacggccactctgccgctgcacatggtg
gtccacggcatcggcgccctggagggcttcgacggcggcttcacccgcctctccgaggcc
tacgacctcctcaggtcctggggcctgcccaccgccgagcacaaccgggtcgtcgacgac
ctcgacggcgtacgggagttcatcgcctattacggcgagaaccgtcactccgtggcgcac
gagatcgacggcgcggtcgtcaagctggacgagatccggctgcagggccggctcggctcg
acggcgcgcgctccccgctgggccatcgcgtacaagtacgcgccggaagaggtcaacacc
aagctcatcgacatcaaggtgggcgtcggccgcaccggccgggtcacgccgtacgcccag
gtcgagccggtcaccgtggccggctcggaggtcgagttcgccaccctccacaaccaggag
gtcgtcaaggccaagaacgtgctcatcggggacacggtcgtcatccgcaaggccggtgac
gtcatccccgagatcctcggcccggtcgtggacctgcgcgacgagaacgagacgcgcccg
ttcgtgatgccgacagagtgtcccgagtgcgggacgccgctgcgcccgatgaaggagggc
gacatcgatctgcggtgccccaacgcccgcagctgccccgcccagttgagagagcgcgtc
tcgtatctggcgggccgggagtgcctggacatcgagcacttcggcggggtggccgccgcg
gccctcacccggccgctggagcccgccgacccgcccctggtcgacgagggcgacctcttc
gacctcacggtggagaaactgctccccatcaaggcgtacgtcctggacgcggacagcggt
ctgcccaagcacgacccgaagacgggcgagccgaaggtcgtcacggtcttcgccaaccag
aagggcgagcccaagaagaacaccctcgcactgctgcagaagatcgaggaggccaagagc
cgtcccctcgcccgcttcctcaacgggctctccatccgtcacgtcggaccggtcgccgcc
caggccctggcccgcgagttccgctcgatcgaccggatcgagcaggccacgcaggaggag
ctcacggcggtcgacggcgtgggcgccatcgtcgcgaaggccctggaggagtggttcgcc
gaggaatggcaccgcgagatcatccgtaagtggaaggcggccggtgtccccctggaggac
aggggagccggcgaggacgagggacccaggcccctcgaagggctgacggtcgtggtgacc
ggcacactcgaacaccacacacgcgacggggccaaggaggcgctgcagaaccggggcgcc
aaggtgaccggctcggtgtcgaagaagacctcgttcgtcgtggtgggcgagaacccgggc
tccaagcacgacaaggcgatgcagctcaaggtgcccgtcctgaacgaggacggcttcgcc
gtgctgctcgaacagggcccggacgcggcggcggaagtcgcgctcccgatcgaggagtag
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integrated database retrieval system
