Gracilinema caldarium: Spica_0984
Help
Entry
Spica_0984 CDS
T01573
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
scd
Gracilinema caldarium
Pathway
scd00300
Lysine biosynthesis
scd00550
Peptidoglycan biosynthesis
scd01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
scd00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Spica_0984
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Spica_0984
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
scd01011
]
Spica_0984
Enzymes [BR:
scd01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
Spica_0984
Peptidoglycan biosynthesis and degradation proteins [BR:
scd01011
]
Precursor biosynthesis
Amino acid ligase
Spica_0984
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
AEJ19134
UniProt:
F8F2L9
LinkDB
All DBs
Position
complement(1082295..1083965)
Genome browser
AA seq
556 aa
AA seq
DB search
MDRRFSEFFNPGLVKRVNCQVLRYKGQVFKLSPEADTLPPFTEAIQSAMDACILTDVTYD
SRQVQPGNIYFALPGLHTDGHQYIPQAIERGAAVIVHQYELDHYEPEVIYLQCSDSRFAM
SPISAIFFNEPSKELGIIGVTGTEGKSTTVFLIYQLLTLTGKKAGFISTVQYRIGDKEEW
NPEHQTTPEAPTIHRALAAMRDYGMEYAVIESSSHGLSPRTNRLGDVAFDVGVMTNVTHE
HLEFHGTWDQYRSDKANLFRVLDKVNHEKALRNGPLNEMGLRLPVRIPSFSVANADDPSC
TYFANATERRTYTYSIHGEDADLSIRNLEGTDRGNSYDIWVRATGEILHVQDNLPGTFNA
ANVMASLLVVSGLVGLPVTDLVPLVPRLRPVRGRMTVINRGQPFEVIVDYAHTPSSFETV
LPPIKKRIEGRGGRLISLFGSGGERDREKRPRQGKIAADWSDIVILADEDPRGEDPMELL
EEIAAGCSELVRGEQLYLIPDRPQAIRKAFSLAQPGDVVLLLGKGHENSIIYKDHTIPYD
EIGEAEKALAEMGFTN
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggatcgacgattttcagagtttttcaacccagggttggtaaaacgggttaactgtcag
gttttgcggtacaagggccaggtttttaagctttctccagaggctgatacactgcccccc
tttacagaagccatccaatccgccatggatgcatgcatactcaccgatgtcacctatgac
tcccgacaggtacaaccagggaacatatattttgccctcccggggctccataccgatggt
caccagtatataccccaggccattgagcgaggcgctgcggttatcgttcatcaatatgaa
ttggaccactacgaacctgaggtcatctacctgcaatgttccgactcccgctttgcaatg
tcacccatatcggctattttttttaacgaaccttcaaaagaacttggtatcatcggagta
accggtacggagggcaagagtaccacagtttttttaatctatcagctcttaaccctgacg
ggtaaaaaagcgggctttatttcgactgtacaataccgtattggcgataaggaagagtgg
aatcctgaacatcagaccactccggaagcgcccaccattcaccgggctctggcggccatg
cgggactacggtatggaatatgcggtcattgagtccagctcccacggcctttcaccccgg
acaaaccgtttgggggatgtggcctttgatgtgggggtcatgaccaatgtaacccatgaa
cacctggaatttcatggtacctgggatcagtaccgcagtgacaaggccaacctcttccgg
gttctggacaaggtaaatcatgaaaaagccctgagaaatgggcccttaaacgagatggga
cttcggcttccggtccgtattccatccttctcggtagccaacgcagacgacccaagttgc
acctattttgccaatgcgaccgaacggcgaacttatacctacagcattcacggagaagat
gcggacttgtccatccgaaacttggaaggtaccgatcgggggaacagctatgatatctgg
gtcagggcaaccggtgaaatcctccatgtacaggataatctgccgggaacctttaatgcg
gctaatgttatggcctcattactggtggtttcaggcctggtaggacttcctgtaacagac
ctggtgcctttagtaccccgcctgagaccggtacggggtagaatgacggtcatcaaccgg
ggtcagcccttcgaggtcatcgtggattatgcccatacgccctcttcctttgaaacggta
cttccacctataaaaaaacggatcgagggtcggggcggccgtctcatcagcctctttggt
tccggcggtgaacgggaccgggaaaaacggccccggcagggtaaaattgccgcagactgg
tccgacattgtcattttggccgacgaggacccccgtggggaagatcccatggagcttctg
gaagaaattgccgcaggctgttctgaacttgtacggggagaacagctctacctcataccg
gaccggccccaggcgattcgcaaagccttcagtctcgcccaaccgggcgatgtggtcctg
cttctgggaaagggtcacgaaaattctatcatttataaggatcatacaatcccctatgat
gaaattggggaagcagaaaaggctctggcagaaatgggcttcacaaactga
DBGET
integrated database retrieval system
