Squalius cephalus (European chub): 307147089
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Entry
307147089 CDS
T11930
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
scep Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
scep04040
]
307147089 (scn4aa)
Ion channels [BR:
scep04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
307147089 (scn4aa)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
307147089
NCBI-ProteinID:
XP_079707689
LinkDB
All DBs
Position
19:5611227..5657229
Genome browser
AA seq
1834 aa
AA seq
DB search
MASLVPRTGSYTLRKFTPESLAEIERLIQERSTREEGDRVEEEPLAPSNDLEAGKCLPMI
YGEPPKDLLNTPLEDLDPFYKAQKTFIVISKGNTIFRFAAEPALFCISPFSPVRRGAIKI
LIHSYFSLFIMITILSNCVFMTMSNPPAWSKTVEYVFTGIYTFEATIKVLSRGFCVGPFT
FLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALIQSV
KKMVDVMILTVFALAVFALIGLQLFMGNLRHKCIRWPIPNSTIFDVDNSTMVNDTTLNVT
DTFDFKAYIDNEENQYFLEESLDALICGNSSDAGRCPEGYTCMKAGRNPNYGYTSYDNFG
WAFLALFRVMTQDYWENLFQLTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYDEQ
NAATLAEAIEKEEKFQRLLEQLRNQEVGSKASLASQTTQSRASNRTGSLHSLDGDDAIKD
CNGRIVPRLIINRVSSDRELSQEKFTRDPPEEDDRSMSSKHSMQFLDQPKLSKRTASAIS
VLTATMEDFEDAQRPCPPGWYKFADIFLKWDCWAPWVIFKNWVHFVVMDPFVDLGITICI
VLNTLFMAMEHYPMSPDFEHVLSVGNLVFTGIFTAEMVFKLIALDPYYYFQVGWNIFDSI
IVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLSMLIKIIGNSVGALGNLTLVLA
IIVFIFAVVGMQLFGKSYKDCVCKISQDCELPRWHMNDFFHSFLIVFRILCGEWIETMWD
CMEVAGANMCLIVFMMVMVIGNLVVLNLFLALLLSSFSGDNLSAGDDDGEMNNLQIAIGR
ITRGIDWLKAFVTSMVGQILGKKPPDNNEGVVEGDTEQYALNHLDEGKMADGLTNSLSPT
LTVPIARFESDVEEDSDESSDEEDRKATLNDDDSSVCSTVDYRPPEPEPEPEEEEEPEPE
EPESCFTEGCVKRCTCLSVDITTGWGKKWWNLRRTCFTIVEHDYFETFIIFMILLSSGAL
AFEDINIERRRVIKIILEYADKVFTYIFIVEMLLKWVAYGFKTYFTNAWCWLDFLIVDVS
LVSLTANLMGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLVCL
IFWLIFSIMGVNLFAGKFYHCINTTTEERFPMDVVNNRSDCMALMLTNEARWVNVKVNYD
NVGLGYLSLLQIATFKGWMDIMYAAVDSREVEEQPSYEINLYMYLYFVIFIIFGSFFTLN
LFIGVIIDNFNQQKSKFGGEDLFMTEEQKKYYDAMKKLGSKKPAKPIPRPSNCIQGMVFD
FISKQFFDIFIMVLICLNMVTMMIETDDQSTEKEDILYLINLVFIIIFSGECILKMIALR
QYFFTIGWNVFDFVVVILSVAGLMLSDIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGI
RTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKQAGIDDIFNFETFGGSIIC
LFEITTSAGWDGLLLPIMNSGPPDCDPDIENPGTDVRGNCGNPGMGIMFFCSYIIMSFLV
VVNMYIAIILENFNVAQEESGDPLCEDDFTMFDETWEKFDVDATQFIEYNRLFDFVDTLQ
EPLRIAKPNRLKLITMDLPIVSGDKIHCLDILLAVTREVLGDTIEMTAMQKSIEAKFVMN
NPTSASFEPITTTLRRKEEERAAIAVQRTYRRHLLKRAIRHACFLRRSKRKVSSQGDEEP
PETQGLIERKMDALYGSNPELAMALELQARPMPSNGPPPEPTSVPQHGASVTYPRPQGQL
IIPVECTREMILRSAPAMHGLCSSENATLKETIV
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcctggtccctcgcacaggctcatacacgttacgtaaattcaccccagagtcg
ctggcggagatcgaaaggctcatccaggagaggagcaccagggaggaaggagacagggtt
gaggaggaaccactggcaccgagcaatgatctggaggcaggaaagtgtctgcccatgatc
tatggtgaaccaccaaaggatctcctcaacacgcctctggaggatctagaccccttctat
aaagcacagaaaacgtttattgtcataagcaagggaaacacaatcttcaggtttgcagct
gaaccagcattgttttgtatcagtccttttagtcctgtcagaagaggagccatcaaaatt
cttatacattcatattttagtttgttcatcatgatcaccatcctgtccaactgcgtgttc
atgacaatgagtaaccctccagcctggagtaaaacagtcgagtatgtttttactggtatc
tatacctttgaagcaacaatcaaagttttgtcacgaggcttctgcgtgggacctttcaca
ttccttcgtgatccatggaactggcttgatttcatggtgattagcatggcgtacgtcaca
gagtttgtagaccttggtaatgtgtcagcactgaggacgtttcgtgttcttcgagctctc
aaaacaatcacagttatccctggtttgaaaaccattgtcggggctttgattcagtcagtc
aagaagatggtagacgtaatgattttgaccgtctttgcactggctgtatttgccctcatt
ggcctgcagctgttcatgggaaatctacgtcataagtgtatccgttggcccattcccaac
agcaccatctttgatgtcgacaactccaccatggtcaatgacaccaccctcaacgtcaca
gatactttcgacttcaaagcatacatagacaatgaagaaaaccaatactttctggaagaa
agtttagatgctttaatatgtggtaacagctctgatgctgggaggtgccccgaaggatac
acttgtatgaaggctgggcgaaacccaaattatggctacaccagctatgacaactttggc
tgggcctttctcgccctcttcagagtcatgactcaggactattgggagaatctcttccag
ttgacccttcgtgctgctgggaagacctacatgatcttctttgtggtggtcatcttcctg
ggctctttctacctcatcaatctgatcttggctgtggttgcaatggcatatgatgagcag
aatgcggccaccttggctgaggccattgagaaagaagagaagtttcaaagattgctagag
cagctcaggaaccaagaggtaggcagtaaagcatctctggccagccagacaactcaaagt
cgagcgtcaaacaggactggttccctgcacagtcttgatggtgatgatgccataaaggac
tgtaatggccggattgtgcctcgcctcatcatcaacagagtctcctctgacagagagtta
tcacaagagaaattcacaagagatcctcctgaagaggatgacaggtccatgagctccaaa
cacagcatgcagttcctggaccagccgaaactctccaagagaacagctagtgccatcagt
gtgctcacggccacgatggaggattttgaagatgctcagaggccttgtcccccaggctgg
tataaattcgctgatattttccttaaatgggactgctgggctccctgggtcatctttaag
aactgggttcattttgtagtgatggacccatttgtcgatctaggtatcaccatctgcatt
gtgctcaacactcttttcatggccatggagcactaccccatgagtccagatttcgaacat
gttctctcagtgggcaacttggtatttacaggaatcttcacagctgaaatggtgttcaag
cttattgctttggacccctactactacttccaggtgggctggaacatttttgacagcatc
attgtcactctcagtctggtagagttgggactggccaatgttcagggattgtccgttctc
cggtcctttcgtttgctacgtgtcttcaaactcgctaaatcttggcccacccttagcatg
ctgatcaagatcatcggcaactcagttggtgccctggggaacctaacgcttgtcctggcc
atcatcgtcttcatcttcgccgtggtgggcatgcagctctttggcaagagctacaaggac
tgtgtttgtaagatctctcaggactgcgagcttccacgctggcacatgaacgacttcttc
cactcttttctcatcgtcttccggatcttgtgtggagagtggatcgagaccatgtgggac
tgcatggaggtggcgggagcaaacatgtgtttgatagtcttcatgatggtcatggtcatt
ggaaacctagtggtgctgaatctgttcctggccctgctgctcagctccttcagtggggat
aacctgtctgcaggtgatgacgatggtgagatgaacaaccttcagatcgccattggtcga
atcaccaggggtatagattggctcaaagccttcgtcaccagtatggtgggacagattcta
ggaaagaaacctcctgacaataatgagggagtagtggaaggagacacagaacaatatgct
ttaaaccacctggatgaggggaaaatggcagatggcttgaccaactctttgtctccaaca
ctgactgtgcccattgctcgttttgagtccgatgttgaagaggactccgatgaatcttct
gatgaggaggacagaaaggccactcttaatgatgacgactcttcggtttgtagcacagtg
gactaccgacctccagaacccgagcctgagcccgaagaggaagaagaacctgagcctgaa
gagccagagtcctgtttcacagagggttgtgttaagcgatgtacatgtttgagtgtagac
atcactacaggatgggggaaaaagtggtggaacctgcgaagaacatgcttcaccatcgtt
gagcatgactactttgagaccttcatcatctttatgatcctcctcagcagtggagcactg
gcttttgaggatatcaacattgagcgccgcagagtgatcaagatcatcctggagtatgct
gataaagtcttcacatacattttcattgtggagatgttactgaagtgggtggcatatggt
ttcaagacctacttcactaacgcatggtgctggctggacttcctcattgtggatgtgtct
ctggtcagtttaacagccaatttaatgggctattctgagctgggaccaatcaaatctctc
agaacactcagggctcttcgaccccttcgagctctgtcgagatttgagggaatgagggtg
gtggtgaacgcactggttggtgcaattccctccatttttaatgtgctcctggtgtgtctg
atattctggctcatcttcagcattatgggagtcaatctatttgctggaaagttctaccac
tgcatcaacaccaccacagaggaacgctttcccatggatgtggtcaacaacaggagtgac
tgcatggcactgatgctcaccaatgaggcgcgctgggttaatgtcaaggtcaactatgac
aacgtgggtcttggctacctctctctactgcaaattgccacattcaaaggctggatggat
atcatgtatgctgcagtggattctagagaggtagaagagcagccatcatatgagatcaac
ctttacatgtacctatattttgttattttcatcatttttggctcctttttcactctcaac
ctcttcattggtgtcatcattgacaactttaatcagcaaaagtcaaagtttggaggggaa
gaccttttcatgacagaggaacagaaaaagtactacgatgccatgaagaagttgggttcc
aaaaagcctgcaaaacctatccctcggccttcgaattgtatccagggcatggtgtttgac
ttcatctcaaaacagttctttgacatctttatcatggtgcttatctgcctcaatatggtg
accatgatgatagagacagatgaccagagtactgagaaagaggatatcctgtacctgatc
aatttggtgttcatcatcatcttctcaggggaatgcatacttaagatgattgcacttaga
cagtacttcttcactattggctggaatgtctttgattttgttgtggtcatcctttctgta
gcaggtctgatgttatcggacatcattgagaagtactttgtgtctcccaccttgttccgt
gtcatccgacttgctaggatcggccgcgtgctacgtctcatcagaggtgcgaaaggcatt
aggactcttttgtttgccttgatgatgtcacttcctgccctcttcaacattgggctgctt
ctgttcctcatcatgttcatcttctcaatttttggcatgtctaactttgcctatgtgaaa
aagcaggcaggcatcgatgacatcttcaactttgaaacatttggcggtagcatcatctgt
ctgtttgagatcacaacttcggcaggctgggatgggcttctgctgcctattatgaacagc
ggccctccagattgtgaccctgacatagagaaccctggtacagatgttcggggtaactgt
gggaatcctggcatgggcatcatgtttttctgcagttacataatcatgtcgttcctggtg
gttgtgaacatgtacattgccatcattcttgagaacttcaatgttgctcaagaggagagt
ggagacccactctgcgaggatgactttacgatgttcgacgagacatgggaaaagtttgac
gttgatgctacacagttcatcgaatacaaccgcttgtttgactttgtcgataccttgcag
gaacctctgcggattgccaaacctaaccgcctcaaactaatcaccatggatctgcccatt
gtaagcggagacaaaatccactgtctggatattcttctggcagttacccgtgaggttctt
ggcgacaccatcgagatgactgccatgcagaagagcattgaagccaagttcgtaatgaac
aaccccacatctgcctcatttgagccaatcaccaccactctcaggaggaaggaggaagag
cgagcagccattgcggttcaacgaacataccgtagacatctcctcaaacgtgctatccgc
catgcctgctttttgcgtcgctcaaagagaaaagttagtagtcagggcgatgaagaacct
cctgaaacccaagggctaattgaaaggaaaatggatgccttgtatggtagcaacccagaa
cttgccatggctcttgagttgcaggctaggcctatgccatctaatggaccgccacctgag
cccacctcggtcccgcagcatggagcatcagtgacctaccctcgaccgcagggacaactc
ataatcccagtggagtgcacaagggagatgatcctccgatctgcacccgcaatgcatggc
ctgtgcagttcagagaatgcaacattaaaagagacaatagtataa
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integrated database retrieval system
