Streptococcus parasanguinis FW213: Spaf_0854
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Entry
Spaf_0854 CDS
T02115
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scf
Streptococcus parasanguinis FW213
Pathway
scf03030
DNA replication
scf03410
Base excision repair
scf03420
Nucleotide excision repair
scf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Spaf_0854 (ligA)
03410 Base excision repair
Spaf_0854 (ligA)
03420 Nucleotide excision repair
Spaf_0854 (ligA)
03430 Mismatch repair
Spaf_0854 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scf03032
]
Spaf_0854 (ligA)
03400 DNA repair and recombination proteins [BR:
scf03400
]
Spaf_0854 (ligA)
Enzymes [BR:
scf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Spaf_0854 (ligA)
DNA replication proteins [BR:
scf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Spaf_0854 (ligA)
DNA repair and recombination proteins [BR:
scf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Spaf_0854 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spaf_0854 (ligA)
MMR (mismatch excision repair)
DNA ligase
Spaf_0854 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Spaf_0854 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DUF1889
Motif
Other DBs
NCBI-ProteinID:
AFJ25855
UniProt:
I1ZLD1
LinkDB
All DBs
Position
874505..876463
Genome browser
AA seq
652 aa
AA seq
DB search
MKTRMKELVELLNRYAYEYYTKDTPSVSDSEYDQLYRELVELETAHPDEILPESPTHRVG
GVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRVRKEFSSISYVCELKIDGLSISLTYE
NGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPEPVNITVRGECYMPRASFDRVNQIRQ
ENGEPEFANPRNAAAGTLRQLDTKIVAKRNLATFLYQEVSPTDQSSQEGVLEKLARLGFV
VNQERVLAEDMEQIWDFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELGFTVKAPKWAVA
YKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIHQD
DTVIVYKAGDIIPAVLRVVKDKRVSDQALAIPTQCPSCQSELLHFEDEVALRCINPLCPA
QMKEGLNHFASRDAMNITGLGPAVVEKLFAAQLVEDVAGIYRLTVEDLLTLEGFKEKSAE
KLYEAIQASKENSAEKLLFGLGIRHVGSKVSQILLQEFHDIDQLATADPERIASIDSLGM
VVAESLKRYFAQEGSKRLLQELKEASVNMAYLGEKVAADAALSGMTVVLTGKLERLTRSE
AKAKLESLGAKVTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccagaatgaaagaattagtggaattactcaatcgatatgcttacgagtattac
acaaaagacactccatctgtttcagatagtgaatatgatcaattatatcgggagttggtg
gaactagaaaccgctcatcctgatgagatcttaccagagagtcctactcaccgtgtaggt
ggggtggttttaaaaggctttaccaaataccagcaccagtatcccctttatagtttgcag
gatgctttttcgcgtgaagaattagaagcctttgatcagcgtgtccgtaaggaattttct
tccatcagctatgtttgtgagctgaagatcgatggcttgtccatttccctcacctatgaa
aatggtgtccttgtaacgggggcaacacgtggggatggttctgtcggtgaggatattaca
gagaacctcaagcgtgtcaaggatattcctttggtgttaccagagccagtgaacatcaca
gttcgaggtgagtgctacatgccgcgggcttcctttgatcgggttaatcaaattcgtcaa
gaaaatggcgagcctgagtttgctaatccacgaaatgctgctgcaggaacgcttcgtcaa
ttggatacgaaaatcgtggccaagcgaaatctcgcaaccttcttgtatcaagaagtgagc
ccgacggatcaaagcagtcaggaaggcgtgcttgagaaattagcccgcttagggtttgtc
gtgaaccaagagcgagtgctggctgaggatatggagcaaatttgggactttatccaaaaa
gtagcccaacttcgagaggatcttccctatgatatcgatgggatcgtcatcaaggtcaat
gacctagctgttcaagaagaactaggctttaccgtaaaagcccctaaatgggctgtcgcc
tataagtttccagctgaagaaaaagaagcgaaaatcttatcggtggattggacggttgga
cggaccggagttgtgaccccaactgccaatctaactccagtccagctagcaggaactacc
gttagtcgggcaaccttgcacaatgtggactatattgctgaaaaagatattcatcaggat
gataccgtcattgtctacaaggcgggtgatatcattcctgcggtcttgcgtgtcgtcaaa
gataaacgggtatctgatcaagcattagccattccaactcaatgtccgagctgccagagt
gagttgcttcatttcgaggatgaggtggcccttcgctgtatcaatccgctctgtccagca
cagatgaaggaaggattgaaccactttgcaagtcgggatgctatgaatatcacaggcttg
ggtccagctgttgtagagaaactcttcgcagctcagttggtagaggacgtagctgggatc
tatcgtctgacagtcgaggacctattgaccttggaaggctttaaagaaaaatctgctgaa
aaactctatgaagccattcaagcttcaaaagagaattcagctgagaagttactctttggt
ttggggatccgccatgtcggtagcaaggttagtcaaatcttgctccaagaattccatgac
atcgatcaattggctacagctgatccagaacgaattgccagcattgatagtctcggtatg
gtcgtggctgaaagcctcaagcgttatttcgctcaagaaggatccaagcgcctattgcaa
gagcttaaagaagctagcgtcaatatggcctatcttggtgagaaagtcgctgctgatgcg
gccctatcaggaatgacagtcgttttgactgggaagctagagcgactcacgcgttcagaa
gcaaaggcaaaattagaaagtctgggcgctaaggtgactggatcggtttccaaaaaaaca
gatttagtcgttgcaggtagtgacgctggtagcaagttaaccaaagcacaagaattagga
atccaggtagaagatgaggcctggcttgaaagtttgtag
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