Streptococcus constellatus subsp. pharyngis C1050: SCI_0879
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Entry
SCI_0879 CDS
T02832
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scg
Streptococcus constellatus subsp. pharyngis C1050
Pathway
scg03030
DNA replication
scg03410
Base excision repair
scg03420
Nucleotide excision repair
scg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCI_0879 (ligA)
03410 Base excision repair
SCI_0879 (ligA)
03420 Nucleotide excision repair
SCI_0879 (ligA)
03430 Mismatch repair
SCI_0879 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scg03032
]
SCI_0879 (ligA)
03400 DNA repair and recombination proteins [BR:
scg03400
]
SCI_0879 (ligA)
Enzymes [BR:
scg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCI_0879 (ligA)
DNA replication proteins [BR:
scg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCI_0879 (ligA)
DNA repair and recombination proteins [BR:
scg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCI_0879 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCI_0879 (ligA)
MMR (mismatch excision repair)
DNA ligase
SCI_0879 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCI_0879 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
RTT107_BRCT_5
Motif
Other DBs
NCBI-ProteinID:
AGU79824
LinkDB
All DBs
Position
899321..901279
Genome browser
AA seq
652 aa
AA seq
DB search
MKDRMLELVNLLNQYAHEYYTTDNPSVSDSEYDRLYHELLDLEQQYPELVQADSPTHRVG
GKVLEGFEKYQHQYPLYSLQDAFSREELEAFDVRIRKDFPKVSYLCELKIDGLSISLMYE
NGILVAGATRGDGSVGENITENLKRVKDIPLTLPTAVNLTVRGECYMPRSSFDAVNQLRQ
ENGEPEFANPRNAAAGTLRQLDTAIVAKRNLATFLYQEASPTDVSTQEAVLNKLSKNRFS
VNERHILAYSMDEVWRFIEQINHERAQLPYDIDGVVIKVNDLSVQEELGFTVKAPKWAIA
YKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVKLAGTTVSRATLHNVDYIAEKDIRKD
DTVIVYKAGDIIPAVLRVVENRRQSEEQLEIPTNCPSCNSELIHFEDEVALRCINPRCPA
QIKEGLIHFASRDAMNITGLGPAVVEKLFAQELVKDVAGIYHLTVEDLLQLENFKEKSAN
KLYTAIQTSKENSAEKLLFGLGIRHVGSKVSQILLEHFHDLEQLAKAEKEEIATLDSLGM
VIAESLTSYFAQEGTHILLSELKEVGLNFTYLGEKVAADAALSGLTVVLTGKLERLNRSE
AKKKLESLGAKVTSSVSKKTSLVVAGADAGSKLIKAQELGIDIRDESWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacagaatgttagaactggtgaatctactaaatcaatatgcgcatgaatattat
acaactgataatccaagcgtatcggatagtgaatatgataggttatatcatgaattgtta
gatttagaacagcaatacccagagctcgttcaggctgatagcccaactcatcgtgtgggt
ggtaaggttttagaagggtttgaaaaataccaacatcagtatccgctatatagtttgcag
gatgctttttcacgtgaagagttagaggcatttgatgtacggattcgcaaagattttcca
aaggtgagttatctgtgtgagttaaaaattgatggtctctccatttctcttatgtatgaa
aatggtattttggttgcaggagccactcggggagatggctccgtcggagaaaatatcaca
gaaaatttaaaaagagtgaaagatattccgctaactttgccaactgctgtaaatttgaca
gttcgtggtgaatgttacatgccacgtagttcttttgacgcagtgaatcaactgcgtcaa
gaaaatggagagccagaatttgcaaatccgagaaatgcagcggcaggaacgctgcgtcag
ttggatactgcaattgttgccaagcgaaatctagcaacttttctttatcaagaagccagt
ccaacagatgtgtcaactcaagaagctgttttaaataagttatctaaaaatagatttagc
gtaaatgaacggcatattttggcatattcgatggatgaagtatggcgatttatagagcaa
atcaatcacgaacgtgcgcaattgccttatgatattgacggtgttgtcatcaaggtaaat
gatttatctgttcaagaagagctcggttttaccgtgaaagctcctaaatgggcgattgct
tataaatttccggcggaagaaaaagaagcacagcttttatcggttgattggacggttggg
cgaactggagtggttacaccgaccgctaatcttacacctgtgaaattagcagggacaacc
gtcagtcgagcaactctgcacaatgtcgattacattgctgaaaaagatattcgtaaagac
gatacagttatcgtttataaggcgggtgatatcattccagctgttttgcgagtggttgaa
aacaggcgccaatcagaagagcaactagagattccaacgaactgtccaagttgcaacagc
gagctgattcactttgaagatgaagtggctttgcgctgtatcaatccgcgctgtcctgca
caaattaaggaggggttgattcatttcgcgagccgtgatgccatgaatatcacagggctt
ggaccagcagtggtggagaaattatttgctcaggaattggtgaaagatgtggctggcatt
taccacttgactgtcgaagatttgctgcaattggaaaattttaaggaaaaatcagctaat
aagttgtatactgctattcagacttctaaggaaaattctgccgagaaattattatttggc
ttgggcattcgccatgttggaagtaaagtcagtcagattttgctagagcattttcatgat
ttggagcaattagcaaaagcagaaaaagaagaaattgctacactggatagtctaggaatg
gtaattgcagaaagtctgactagttatttcgcacaggaaggaactcatattttattgtcg
gaactaaaagaagtggggctaaatttcacttaccttggcgaaaaagtggcagcagatgca
gcactttctggattgaccgttgttttaacaggaaaattggaacgtctcaatcgttcagag
gcgaaaaagaaattagaaagtttaggtgcaaaggtgacgagctcggtatctaagaaaaca
agtctagtcgttgccggagcagatgcaggaagtaaattaataaaagctcaagagttaggc
attgacattcgtgatgaatcttggcttgagagcttgtag
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