Streptomyces chartreusis: CP983_13215
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Entry
CP983_13215 CDS
T07157
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scha
Streptomyces chartreusis
Pathway
scha03030
DNA replication
scha03410
Base excision repair
scha03420
Nucleotide excision repair
scha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CP983_13215 (ligA)
03410 Base excision repair
CP983_13215 (ligA)
03420 Nucleotide excision repair
CP983_13215 (ligA)
03430 Mismatch repair
CP983_13215 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scha03032
]
CP983_13215 (ligA)
03400 DNA repair and recombination proteins [BR:
scha03400
]
CP983_13215 (ligA)
Enzymes [BR:
scha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CP983_13215 (ligA)
DNA replication proteins [BR:
scha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CP983_13215 (ligA)
DNA repair and recombination proteins [BR:
scha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CP983_13215 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CP983_13215 (ligA)
MMR (mismatch excision repair)
DNA ligase
CP983_13215 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CP983_13215 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
ARMT1-like_dom
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QEV67542
LinkDB
All DBs
Position
complement(3166221..3168413)
Genome browser
AA seq
730 aa
AA seq
DB search
MAGDKQAETTVPTEAREQHAKLAEQIEEHRFRYYVKDAPVVSDAEFDDLLRILEALEDDY
PELRTPDSPTQKVSVEFETDLAEVEHRERMLSLDNVFDDAGLAAWAERVHKDVGTPGYHF
LCELKVDGLAVNLTYENGRLTRAATRGTGRIGEDITPNVMTIAEIPHRLAGDHVPGLVEI
RGEVYFPMEAFEALNARRVAAGEKPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAL
EGFEGLSRLSGAYDLLKSWGLPTSRHNRVVDDLDGVREFIAYYGENRHSVEHEIDGVVVK
LDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAG
SEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPSECPE
CGTALRPMKEGDVDLRCPNARSCPAQLRERLFYLAGRKALDIEHFGYVAAAALTKPLEPS
EPPLMDEGDLFDLSAEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQGELKKNAV
SMLEFIAAAKERPLARVLTGLSIRHVGPVAAEALAREFRSIDRIEQASEEELANTDGVGS
IIAASLKEWFAEEWHQEILRKWRAAGVRMEEEGSGEDEGPRPLEGLTVVVTGTLEHFTRD
GAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFNVLLEQGPEA
AAEVALPAEE
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagacgacggtgcccaccgaggcacgggagcagcacgcg
aagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgccccggtc
gtcagcgacgcggagttcgacgacctgctgcgcatcctcgaagcgctggaggacgactac
ccggagctgcgcaccccggactcgccgacccagaaggtgtccgtcgagttcgagacagat
ctggccgaggtcgagcaccgcgagcgcatgctctccctcgacaacgtcttcgacgacgcc
gggctcgccgcctgggccgagcgcgtccacaaggacgtcggcacccccgggtaccacttc
ctgtgcgagctcaaggtcgacggcctcgcggtgaacctgacgtacgagaacggcaggctg
acccgcgcggccacccgcggcacgggccggatcggcgaggacatcacgcccaacgtgatg
acgatcgcggagatcccgcaccggctggccggcgaccacgtcccggggctcgtcgagatc
cgcggcgaggtctacttcccgatggaggcgttcgaggcgctcaacgcccgccgggtcgcg
gccggcgagaagccgtacgccaacccgcgcaactccgcctcgggttcactgcgccagaag
gacccgaaggtcaccgcgacccttccgctgcacatggtcgtccacggcatcggcgccctt
gagggcttcgagggcctgtcccggctgtccggggcctacgacctgctcaagtcctggggc
ctgcccacctcccggcacaacagagtcgtcgacgacctcgacggcgtccgcgagttcatc
gcgtactacggcgagaaccgccactccgtggagcacgagatcgacggcgtggtcgtcaag
ctcgacgagatcccgctccagggccgcctcggctccacctcgcgcgccccgcgctgggcc
atcgcgtacaagtacgcgccggaggaggtcaacaccaagctcgtcaacatccgtgtgggt
gtcggccgcaccggccgcgtcacgccgtacgcccaggtcgagcccgtcacggtcgcgggc
tcggaggtcgagttcgccaccctgcacaaccaggacgtggtcaaggccaagggcgttctc
atcggggacacggtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggaccg
gtcgtcgacctgcgcgacggcagcgagcgcgagttcgtgatgccgtccgagtgcccggag
tgcggtacggcgctcaggcccatgaaggagggcgacgtcgacctgcgctgcccgaacgcc
cgctcctgcccggcccagttgcgcgagcggctgttctacctcgcgggccgcaaggcgctg
gacatcgagcacttcggctatgtagccgccgccgcgctcaccaagccgctggagccgtcc
gagccgccgctgatggacgagggcgacctgttcgacctgagcgccgagcagttgctgccc
atcagggcgtacgtcctcgaccaggacagcggcctgcccaagcgcgacccgaagaccggc
gaggagaagatcgccacggtcttcgccaaccagcagggcgagctcaagaagaacgcggtt
tcgatgctggagttcatcgccgccgccaaggagcgcccgctggcccgcgtcctcaccggc
ctgtcgatccgtcacgtcggcccggtcgccgccgaggcgctggcccgcgagttccgctcc
atcgaccgcatcgagcaggcgagcgaggaggagctggcgaacaccgacggcgtcgggtcg
atcatcgccgcctcgctcaaggagtggttcgccgaggagtggcaccaggaaatcctgcgc
aagtggcgggcggccggcgtccgcatggaggaggagggctccggtgaggacgaggggccg
cgtccgctggaggggctcaccgtcgtcgtcaccggcacactggagcacttcacgcgcgac
ggcgccaaggaagcgctccagagccgcggagcgaaggtaaccggttccgtttcgaaaaag
acatcttttgtggtggtgggcgacaaccccggatccaagtacgacaaggcgatgcagctg
aaggtgcctgtcctgaacgaggacggcttcaatgtcctgctggaacaggggccggaagcg
gcggccgaagttgccctccccgcagaggagtaa
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integrated database retrieval system
