Streptomyces chengbuensis: QRN89_24555
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Entry
QRN89_24555 CDS
T10474
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sche Streptomyces chengbuensis
Pathway
sche03030
DNA replication
sche03410
Base excision repair
sche03420
Nucleotide excision repair
sche03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sche00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QRN89_24555 (ligA)
03410 Base excision repair
QRN89_24555 (ligA)
03420 Nucleotide excision repair
QRN89_24555 (ligA)
03430 Mismatch repair
QRN89_24555 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sche03032
]
QRN89_24555 (ligA)
03400 DNA repair and recombination proteins [BR:
sche03400
]
QRN89_24555 (ligA)
Enzymes [BR:
sche01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QRN89_24555 (ligA)
DNA replication proteins [BR:
sche03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QRN89_24555 (ligA)
DNA repair and recombination proteins [BR:
sche03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QRN89_24555 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QRN89_24555 (ligA)
MMR (mismatch excision repair)
DNA ligase
QRN89_24555 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QRN89_24555 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Zn_ribbon_TFIIB
RNA_lig_T4_1
DUF8512
Zn_ribbon_CLPX_N
Motif
Other DBs
NCBI-ProteinID:
WJY52704
LinkDB
All DBs
Position
5535791..5537974
Genome browser
AA seq
727 aa
AA seq
DB search
MAVEQQGPAPAEARDKHARLAEQIEEHRFRYYVKDQPVISDAEFDRLMRSLEALEEEHPE
LRTPDSPTQKVSVAYETEFTAVEHRERMLSLDNAFDDAELAAWADRVAKDVGASAHHFLC
ELKVDGLAVNLTYEKGRLTRAATRGDGRTGEDITPNVRTIADIPNRLKGERVPDLVEIRG
EVYFPMDAFEELNARRVAAGEQPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAREG
LEIGRLSEAYELLHEWGLPTARHYKVVDSLDEVRAFIAYYGEHRHSVEHEIDGVVVKLDE
IPLQGRLGSTSRAPRWAIAWKYPPEEVNTKLVDIRVGVGRTGRVTPYAQVEPVTVAGSEV
EFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPSECPECGT
PLRPMKEGDVDLRCPNARSCPAQLRERLFYLAGRKSLDIEAFGYVAAAALTRPLEPAEPP
LADEGDLFDLTVDQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFANQQGEPKKNTLAML
ENIAAAKERPLARILTGLSIRHVGPVAAEELAREFRSIERIEQASEEELAAVEGVGPTIA
ASVKQWFEEDWHREILRKWRAAGLRMEEEGSGEDEGPRPLEGLTVVVTGTLENHTRDGAK
DALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLDEDGFTVLLEQGPDAARE
VAAPVEG
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtggctgtcgaacagcaggggccggcgccggcggaggcacgggacaagcatgcccggctg
gccgagcagatcgaggagcaccgcttccggtactacgtgaaggaccaaccggtcatcagc
gacgccgagttcgaccggctgatgcggtcgctggaggcgctggaggaggagcatccggag
ctgcgcacgcccgactcgccgacccagaaggtctcggtcgcgtacgagacggagttcacg
gcggtcgagcaccgcgagcggatgctgtccctcgacaacgccttcgacgacgcggagctc
gccgcctgggcggaccgggtcgccaaggacgtcggggcctccgcccaccacttcctctgc
gagctcaaggtcgacggcctggccgtcaacctgacctacgagaagggccggctgacccgg
gccgcgacccggggcgacggccgcaccggcgaggacatcactccgaacgtccggacgatc
gcggacatcccgaaccggctcaagggcgagcgcgtgcccgacctggtggagatccggggc
gaggtctacttcccgatggacgccttcgaggagctcaacgcgcgccgggtcgcggccggt
gagcagccctatgccaacccccgcaactcggcgtcgggttcgctgcggcagaaggacccc
aaggtcacggcgaccctgccgctgcacatggtggtgcacggcatcggcgcgcgcgaggga
ctggagatcggcaggctctcggaggcctacgagctcctgcacgagtggggcctgccgacc
gcccggcactacaaggtggtggactcgctcgacgaggtccgcgcgttcatcgcctactac
ggcgagcaccggcactccgtggagcacgagatcgacggggtggtcgtcaagctggacgag
atcccgctccagggccggctggggtcgacgtcacgggcgccgcgctgggcgatcgcctgg
aagtacccgccggaggaggtcaacaccaagctggtcgacatccgcgtcggtgtgggccgc
accggccgggtcaccccgtacgcccaggtggagcccgtgacggtcgcgggctccgaggtc
gagttcgcgacgttgcacaaccaggacgtggtgaaggccaagggcgtcctgatcggcgac
accgtcgtgctgcgcaaggcgggtgacgtgatcccggagatcctcggcccggtcgccgat
ctgcgggacgggagcgagcgcgagttcgtcatgccgtccgagtgtcccgagtgcgggacg
ccgctgcggccgatgaaggagggcgacgtcgatctgcgctgccccaacgcccgtagctgc
cccgcccaactgcgggaacgcctgttctatctggcggggcgcaagtccctggacatcgag
gcgttcggctatgtcgccgcggcggccctgacgaggccgctggagcccgccgagccgccg
ctggccgacgagggcgacctgttcgacctgacggtggaccagctgctgcccatcaaggcg
tacgtgctggaccaggacagcggactgcccaagcgggacccgaagacgggcgaggagaag
atcgccacggtcttcgccaatcagcagggtgaaccgaagaagaacacactggcgatgctg
gagaacatcgcggccgccaaggagcgcccgctggcccgcatcctcaccggcctctcgatc
cgtcatgtgggccccgtcgccgccgaggagctggcccgggagttccgctcgatcgagagg
atcgagcaggcgtccgaggaggagctggcggccgtcgagggagtcgggccgaccatcgcc
gcctcggtgaagcagtggttcgaggaggactggcaccgcgagatcctgcgcaagtggcgt
gccgcgggcctccggatggaggaggagggctccggcgaggacgaggggccgcgaccgctg
gagggcctcaccgtcgtcgtcaccggaacgctcgagaaccacacgagagatggcgcaaaa
gatgcgctccagagccgtggagcgaaagtgacgggttccgtttcgaagaagacctcattc
gtcgtcgtgggtgacaaccccggatcgaagtacgacaaggccatgcaactgaaggtgccc
gtactggacgaggacggcttcacggtcctgctcgagcaaggcccggacgcggcccgcgag
gtggcggcgccggtcgagggatag
DBGET
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