Streptomyces chromofuscus: IPT68_26055
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Entry
IPT68_26055 CDS
T07378
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
schf
Streptomyces chromofuscus
Pathway
schf03030
DNA replication
schf03410
Base excision repair
schf03420
Nucleotide excision repair
schf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
schf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IPT68_26055 (ligA)
03410 Base excision repair
IPT68_26055 (ligA)
03420 Nucleotide excision repair
IPT68_26055 (ligA)
03430 Mismatch repair
IPT68_26055 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
schf03032
]
IPT68_26055 (ligA)
03400 DNA repair and recombination proteins [BR:
schf03400
]
IPT68_26055 (ligA)
Enzymes [BR:
schf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IPT68_26055 (ligA)
DNA replication proteins [BR:
schf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IPT68_26055 (ligA)
DNA repair and recombination proteins [BR:
schf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IPT68_26055 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IPT68_26055 (ligA)
MMR (mismatch excision repair)
DNA ligase
IPT68_26055 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IPT68_26055 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QOV43204
UniProt:
A0A7M2T4M3
LinkDB
All DBs
Position
5754840..5757038
Genome browser
AA seq
732 aa
AA seq
DB search
MAGDKQAETTNVPAEAREKHVQLAEQIEEHRFRYYVKDAPVISDAEFDRLLRSVEELEEQ
FPELRTPDSPTQKVAGSYATEFTAVEHRSRMLSLDNTFNDDELAAWADRVARELGDQTYH
FLCELKVDGLAVNLTYERGRLVRAATRGDGRAGEDITPNARTIAEIPDRLKGDRVPDLVE
IRGEVYFPMEKFEDLNARLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LEGYEGMTRLSQAYDLLKDWGLPTSPHNRVVDDLAGVREFIAYYGEHRHSVEHEIDGVVV
KLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLIDIKVAVGRTGRVTPYAQVEPVTVA
RSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVIDLRVEDEVRAFVMPSEC
PECGTALRPMKEGDIDLRCPNARTCPAQLRGRVSYLAGRECLDIEHFGDVAAAALTRPLE
PVDPPLVDEGDLFDLTVEKLLPIRAYVLDPDSGLPKHDPKTGEEKIATVFANQKGEPKKN
ALALLRNIEAAKARPLARFLNGLSIRHVGPVAAEALAREFRSIDRIEQADESELANTDGV
GPIIARSLKEWFAEDWHREIIRKWKAAGVRLEEESTGEDEGPRPLEGLTVVVTGTLEHFT
RDGAKEALQTRGAKVAGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEEGFNVLLEQGP
EAASEAALPTGE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagccgagacgacgaacgtgcccgccgaggcacgggagaagcac
gtgcagctcgctgagcagatcgaggagcaccgcttccgttactacgtgaaggacgctccc
gtcatcagtgacgcggagttcgaccggctgctgcgctctgtggaggaactggaggagcag
ttccccgagctgcgcacgccggactcgccgacgcagaaggtcgccgggtcctacgcgacg
gagttcaccgccgtcgagcaccgctcgcgcatgctctccctggacaacaccttcaacgac
gacgaactcgccgcgtgggccgaccgcgtcgcccgggaactgggcgaccagacgtaccac
ttcctgtgcgagctcaaggtcgacggcctcgccgtgaacctcacctacgagcgcggccgc
ctggtccgcgcggccacccgcggtgacggccgcgccggcgaggacatcacgcccaacgcc
cgcaccatcgcggagatcccggaccgcctcaagggcgaccgcgtccccgacctcgtggag
atccgcggcgaggtctacttcccgatggagaagttcgaggatctcaacgcccgtctggtg
gccgccggcgacaagccgttcgccaacccgcgcaacgcggcggccggttcgctgcgccag
aaggacccgcgggtcaccgccacccggccgctgcacatggtggtgcacggcatcggcgcc
ctggagggctacgagggcatgacccgcctgtcccaggcgtacgacctgctcaaggactgg
ggcctgcccacctcgccgcacaacagggtggtcgacgacctcgcgggcgtacgggagttc
atcgcgtactacggcgagcaccggcattccgtggaacacgagatcgacggggtggtcgtc
aagctggacgagatccgcctccagggccgcctcggctccacggcacgcgccccgcgctgg
gcgatcgcgtacaagtacgcgccggaggaggtcaacaccaagctgatcgacatcaaggtg
gccgtcggccgcaccggccgggtcaccccctacgcccaggtcgagccggtgacggtggcc
cgcagcgaggtggagttcgccaccctgcacaatcaggaggtcgtcaaggccaagggcgtc
ctcatcggggacacggtggtgctgcgcaaggccggcgacgtcatcccggagattctcgga
ccggtcatcgacctgcgcgtcgaggacgaggtgcgcgcgttcgtgatgccctccgagtgc
cccgagtgcggcaccgcgctgcgccccatgaaggagggcgacatcgatctgcgctgcccc
aacgcccgcacctgccccgcccagttgcgcggccgggtctcctacctcgcgggccgggag
tgcctggacatcgagcacttcggcgacgtcgcggcggccgcgctgacccggccgctggag
cccgtcgacccgccgctggtggacgagggcgacctgttcgacctcaccgtggagaagctg
ctgcccatcagggcgtacgtcctcgacccggacagcgggctgcccaagcacgacccgaag
accggcgaggagaagatcgccacggtcttcgccaaccagaagggcgaaccgaagaagaac
gcgctggccctgctgcgcaacatcgaagccgccaaggcccgcccgctcgcccgcttcctc
aacgggctctccatccggcacgtcggcccggtcgccgccgaggcgctcgcccgcgagttc
cgctccatcgaccgcatcgaacaggccgacgagagcgagctggccaacaccgacggcgtc
ggacccatcatcgccaggtcgctcaaggagtggttcgccgaggactggcaccgcgagatc
atccgcaagtggaaggcggccggggtccggctggaggaggagagcaccggagaggacgag
ggcccccgcccgctcgaaggcctcaccgtcgtcgtcaccggcacgctcgaacacttcacg
cgggacggcgccaaggaggcgctccagacccgcggtgccaaggtggccggttcggtgtcc
aagaagacgtctttcgtcgttgtgggtgacaaccccggatcgaagtacgacaaggcgatg
cagctcaaggtgccggtgctgaacgaggaggggttcaacgtccttctggagcaaggacct
gaggcggcgtcggaggccgcacttccgaccggcgagtag
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