Streptomyces changanensis: NRO40_21210
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Entry
NRO40_21210 CDS
T09753
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
schg
Streptomyces changanensis
Pathway
schg03030
DNA replication
schg03410
Base excision repair
schg03420
Nucleotide excision repair
schg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
schg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NRO40_21210 (ligA)
03410 Base excision repair
NRO40_21210 (ligA)
03420 Nucleotide excision repair
NRO40_21210 (ligA)
03430 Mismatch repair
NRO40_21210 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
schg03032
]
NRO40_21210 (ligA)
03400 DNA repair and recombination proteins [BR:
schg03400
]
NRO40_21210 (ligA)
Enzymes [BR:
schg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NRO40_21210 (ligA)
DNA replication proteins [BR:
schg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NRO40_21210 (ligA)
DNA repair and recombination proteins [BR:
schg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NRO40_21210 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NRO40_21210 (ligA)
MMR (mismatch excision repair)
DNA ligase
NRO40_21210 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NRO40_21210 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
Zn_ribbon_TFIIB
ILEI
Motif
Other DBs
NCBI-ProteinID:
UUS33088
UniProt:
A0ABY5NAN7
LinkDB
All DBs
Position
4764058..4766250
Genome browser
AA seq
730 aa
AA seq
DB search
MAVEQHEQRDVVPADVREEHARLAEEVEEHRFRYYVKDQPVISDADFDRLLRSVERLEER
YPELRTPDSPTQKVAGAYETEFTAVRHRERMLSLDNAFDDEELAAWAERVARDVGAAEHR
FLCELKVDGLAVNLTYEKGRLTRAATRGDGRTGEDITPNVRTIADIPDRLRGDRVPDLVE
IRGEVYFPMEKFEELNARLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
HEGLDLDRLSEAYGLLQGWGLPTARHNRVVDSLDGVREFIAHFGEHRHSVEHEIDGVVVK
LDEIRLQGRLGSTSRAPRWAIAYKYAPEEVNTRLVNIRVGVGRTGRVTPYAQVEPVTVAG
SEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAECPE
CGTPLKPMKEGDVDLRCPNGRTCPAQLRERLFYLAGRRCFDIENFGYVAAAALTRPLEPA
DPPLVDEGDLFDLTIEQLLPIKAYVLDQDSGLPKRDPKTGEEKVVTVFANQQGEPRKNAL
AMLRNIEEAKRRPLARVITALSIRHVGPVAAEALAREFRSLDRIEAATEEELAAVEGVGS
TIAASLKQWFAEEWHREILRKWRAAGVRMEEESTGEDEGPRPLEGLTVVVTGTLQNHTRD
GAKEALQSVGAKVTGSVSKKTSFVVVGDSPGSKYDKAMQLKVPVLDEDGFTVLLTQGPDA
AREVAVPVEE
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
gtggctgtcgaacagcacgagcagcgcgacgtggtgccggcggacgtccgggaggagcac
gcccggctggccgaggaggtcgaggagcaccgcttccggtactacgtgaaggaccagccg
gtcatcagcgacgccgacttcgaccggctgctgcgctccgtggagcggctggaggagcgg
tacccggagctgcgcacgcccgactcgccgacgcagaaggtcgcgggggcgtacgagacg
gagttcacggccgtccggcaccgggagcggatgctctccctggacaacgccttcgacgac
gaggagctcgccgcctgggccgagcgcgtcgcgcgggacgtcggcgccgcggagcaccgc
ttcctgtgcgagctgaaggtcgacggcctcgccgtcaacctcacgtacgagaagggccgg
ctgacgcgtgccgcgacccgcggcgacggccggaccggcgaggacatcacgccgaacgtc
cgcaccatcgccgacatccccgaccggctccggggggaccgcgtccccgacctcgtggag
atccgcggcgaggtgtacttcccgatggagaagttcgaggagctgaacgcccgtctggtc
gccgccggcgacaagcccttcgccaacccgcgcaacgccgccgccggctccctgcgccag
aaggacccgcgcgtcaccgccacgcgtccgctgcacatggtggtgcacggcatcggcgcc
cacgagggcctcgacctcgaccgcctctccgaggcgtacgggctgctccaggggtggggc
ctgccgacggcccggcacaaccgcgtcgtggactccctcgacggggtgcgggagttcatc
gcccacttcggcgagcaccgccactccgtggagcacgagatcgacggcgtggtcgtcaag
ctcgacgagatccgcctccaggggcggctcggctccacctcgcgcgccccccgctgggcc
atcgcgtacaagtacgccccggaggaggtgaacacccgcctggtgaacatccgcgtcggc
gtcggccgcaccggccgcgtcacgccgtacgcgcaggtcgagccggtcaccgtggccgga
tccgaggtggagttcgccacgctgcacaaccaggacgtggtcaaggccaagggcgtcctc
atcggggacaccgtggtgctgcgcaaggcgggcgacgtcatcccggagatcctcggcccc
gtcgtcgacctgcgggacggcagcgagcgcgagttcgtgatgccggccgagtgccccgag
tgcgggacgccactgaagccgatgaaggagggcgacgtcgacctgcgctgcccgaacggc
cggacgtgtcccgcacagctacgcgaaagactcttctacctcgccgggcgccgctgcttc
gacatcgagaacttcggctacgtggccgccgccgcgctcacccgtccgctggagcccgcc
gacccgccgctcgtcgacgagggcgacctgttcgacctgaccatcgagcagctcctgccc
atcaaggcgtacgtcctggaccaggacagcggcctgcccaagcgggacccgaagacgggc
gaggagaaggtcgtcaccgtcttcgccaaccagcagggcgagccgcgcaagaacgccctc
gcgatgctccgcaacatcgaggaggccaagcggcgcccgctcgcccgggtcatcaccgcc
ctgtcgatccgccacgtcggaccggtggcggcggaggccctcgcccgcgagttccgctcc
ctcgaccgcatcgaggcggccaccgaggaggagctggcggccgtcgagggtgtcggttcc
accatcgccgcctccctgaagcagtggttcgccgaggagtggcaccgcgagatcctgcgc
aagtggcgcgccgccggcgtccggatggaggaggagagcaccggggaggacgagggcccc
cgaccgctggaggggctcacggtcgtcgtcaccggcaccctgcagaatcacaccagggat
ggcgcgaaagaggcgctccagagcgtcggcgccaaggtgaccggttccgtctccaagaag
acctcgttcgtggtcgtcggcgacagtccgggctccaagtacgacaaggcgatgcagctg
aaggtcccggtcctggacgaggacggcttcacggtgctgctgacccaggggcccgacgcg
gcccgggaggtggccgtccccgtcgaggagtag
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