Streptococcus chenjunshii: DDV21_004295
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Entry
DDV21_004295 CDS
T07265
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
schj
Streptococcus chenjunshii
Pathway
schj03030
DNA replication
schj03410
Base excision repair
schj03420
Nucleotide excision repair
schj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
schj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DDV21_004295 (ligA)
03410 Base excision repair
DDV21_004295 (ligA)
03420 Nucleotide excision repair
DDV21_004295 (ligA)
03430 Mismatch repair
DDV21_004295 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
schj03032
]
DDV21_004295 (ligA)
03400 DNA repair and recombination proteins [BR:
schj03400
]
DDV21_004295 (ligA)
Enzymes [BR:
schj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DDV21_004295 (ligA)
DNA replication proteins [BR:
schj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DDV21_004295 (ligA)
DNA repair and recombination proteins [BR:
schj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DDV21_004295 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DDV21_004295 (ligA)
MMR (mismatch excision repair)
DNA ligase
DDV21_004295 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DDV21_004295 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
TRIF-NTD
BRCT_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AXQ78351
UniProt:
A0A372KJS1
LinkDB
All DBs
Position
859394..861352
Genome browser
AA seq
652 aa
AA seq
DB search
MKNRMKKLVEQLNQYAKEYYTEDNPSISDSDYDKLYRELQALEKDYPELIQANSPTHRVG
GVVLDGFEKYEHEYPLFSLQDAFSHAELLEFDRRIKAEFPDAEYLAELKIDGLSVSLTYT
DGRLQVGATRGDGRIGENITENLKRVKDIPLQLEHNLDITVRGECYLPKASFAKINQERQ
ENGETEFANPRNAAAGTLRQLDTAVVAKRHLATFLYQEASPTEAGSQDAVLKGLGQLGFS
VNSHYFLSSSMDEIWNFIEEMTKERDHLPYEIDGVVIKVNSLAMQEELGFTVKAPRWAIA
YKFPAEEKEATLLSVDWTVGRTGVVTPTANLTPVQLAGTRVSRATLHNVDYIAEKDIRIG
DTVVVYKAGDIIPAVLRVADSGRNQQEPLPIPEHCPSCGSDLLHFEDEVALRCINPLCPS
QIKEKLVHFASRDAMNISGLGPAVVEKLFQAELVSDVADIYKLNTEQFMCLEGIKEKSAA
KLSQAVQASKSNSAERLLFGLGIRHVGAKVSRQLLEYFGDIETLAGADFAAISSIAGLGE
VIARSLETYFAKEEAKRLLEELKGNGVNLSYLGPKRVLDAPLSGMTVVLTGKLTEMTRSQ
AAEKLQTLGAHVTGSVSKKTDIVVAGSDAGSKLTKAQNLGITVKDEEWLLGL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatcgaatgaagaaactggttgaacagctcaatcaatatgcgaaagaatattat
actgaggataatcccagtatttctgacagtgactatgacaaactctaccgtgagttacaa
gcgctggaaaaggattatccggagctcatccaggcaaacagccccacacatcgggtgggg
ggagttgttttagacggatttgaaaaatacgaacatgagtatccgctcttttctttgcag
gatgctttttcgcatgcagaattattggaatttgaccgccgcattaaagctgagtttccc
gatgccgagtatttggctgaattaaaaattgacggtctgtctgtttccctgacgtatact
gacggacgcctgcaggtaggcgcaacgcgcggagacgggcgtattggcgaaaatattacc
gaaaatctaaaaagagtaaaagatattcctttgcagctggaacacaatttagatataaca
gtgcgcggcgagtgttatctgcctaaagcctcttttgctaaaataaatcaggagcgtcag
gaaaatggtgaaacagagtttgccaatccaagaaatgctgctgctgggactttgcgtcag
ctggacacggctgtagtggctaaacgtcatttagcaacttttttgtatcaagaggccagt
ccaacagaagcaggcagtcaggacgctgttttaaagggactgggtcagcttggtttttca
gtcaattcccattatttcttaagctcatcaatggatgagatttggaactttattgaggaa
atgactaaagaacgcgatcatcttccttatgaaatagatggtgttgttatcaaggtcaac
agcctggctatgcaggaagagctgggctttactgtcaaggcgcctcgctgggctattgct
tataaatttccagctgaggagaaagaagcgacactcttgtcagtagactggactgtggga
aggactggagttgttacaccaacagcaaatttaactccagttcagctggcaggtaccaga
gtaagccgggcgacactgcataatgtggattatattgccgaaaaagatattcgtatcggt
gatactgttgttgtctataaagcgggtgatatcattcctgctgttttacgggttgcagac
agcggccggaatcagcaggaaccgctgccgattccagagcactgcccgtcttgcggaagc
gatctgctccattttgaagatgaagttgctctgcgctgtatcaatcccctttgtccgagt
cagattaaagaaaaactggtccattttgccagcagagatgccatgaatatcagcggacta
ggtccggctgttgtggaaaaactttttcaggcagagctggtcagtgatgttgctgatatc
tataaacttaacacagagcagtttatgtgtttagagggcattaaggaaaagtcagcggct
aaactttctcaggctgttcaggcttcgaaatccaattctgccgagagacttttgttcggt
ttaggaatccgtcatgtcggcgcaaaagtcagccgccagcttttagagtattttggtgat
atagaaacgctggcaggggcagatttcgctgctatttcgtccattgcgggtctcggcgag
gtgattgcccgctcgctggagacttactttgctaaagaagaagccaaacggctgcttgaa
gaactgaaggggaacggcgttaatctgtcttatctgggaccaaaacgagttctggacgcc
cctctgtcagggatgactgttgttttaaccgggaaattaactgagatgacccgcagtcag
gctgcagaaaaactgcagacgctcggtgcccatgttacaggcagtgtttcaaagaaaacc
gatattgtcgtggcggggagcgatgctggttccaaattaacaaaggcacagaatttaggt
attactgtcaaagatgaagagtggctgcttggtttgtag
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