Sinorhizobium chiapasense: RB548_12465
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Entry
RB548_12465 CDS
T11111
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
schp Sinorhizobium chiapasense
Pathway
schp03030
DNA replication
schp03410
Base excision repair
schp03420
Nucleotide excision repair
schp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
schp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RB548_12465 (ligA)
03410 Base excision repair
RB548_12465 (ligA)
03420 Nucleotide excision repair
RB548_12465 (ligA)
03430 Mismatch repair
RB548_12465 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
schp03032
]
RB548_12465 (ligA)
03400 DNA repair and recombination proteins [BR:
schp03400
]
RB548_12465 (ligA)
Enzymes [BR:
schp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RB548_12465 (ligA)
DNA replication proteins [BR:
schp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RB548_12465 (ligA)
DNA repair and recombination proteins [BR:
schp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RB548_12465 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RB548_12465 (ligA)
MMR (mismatch excision repair)
DNA ligase
RB548_12465 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RB548_12465 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
FdhE_central
RNA_ligase
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WVT02338
LinkDB
All DBs
Position
complement(2556479..2558632)
Genome browser
AA seq
717 aa
AA seq
DB search
MLSERKPVEQLTESEAAEELAFLAAELARHDALYHGQDAPEISDADYDALKRRNDLIEAQ
FPALIREDSPSRKVGAAPSLTFQPVVHARPMLSLDNTFSDEDARDFVAGVYRFLGRLPDH
SIAFTAEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANVRTIGMIPQRLPADAPDV
VEVRGEIYMAKSDFAALNAEMAAQGKPLYVNPRNTASGSLRQLDAKVTASRKLRFFAYAW
GEISAMPADTQLGMVETFKAWGFPVNPLMQRFSSADELLEHYHHIERERPDLDYDIDGVV
YKVDQLDLQARLGFRSRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNEDYIRGIGNSGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERAE
GAEPYKFPTTCPVCGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHMKHFVSRNAFDI
EGLGSKQIEFFFESEDENLRIRTAPEIFTLERRQEASLTKLENIEGFGKVSVRKLFDAIK
NRRSIALHRFIYALGIRHVGETTAKLLARSYGSYDHFGAAMVEAGSFAGDAWNELNSIDG
IGEVVARAIVEFYKEPRNVEVVSRLLEEVTPESAEMPVTTNSPVAGKTVVFTGSLEKMTR
DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALIGG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgttgagtgaaagaaaacccgtcgagcagttgaccgaatcggaagcggccgaagagctt
gcctttcttgcggcggagctcgcccgtcacgatgcactttatcacgggcaggacgccccc
gaaatctcggatgcggactatgacgcgctgaagcggcgcaacgacctgatcgaggcgcag
ttccccgcgctcatccgcgaggacagcccttcgcgcaaggttggcgcggccccctcgctg
accttccagccggtcgtccacgcgcggccgatgctgtcgctcgacaacacgttctcggac
gaagacgcccgcgatttcgtcgccggcgtctatcgcttccttgggcggcttccggatcat
tcgatcgcctttaccgccgagccgaagatcgacgggctttcgatgtcgctgcgttatgaa
aaccggcgccttgtgacggccgcgacacgtggcgacggcacgaccggtgagaacgtcacc
gccaatgtccgcacgattggcatgatcccccagaggcttccggccgacgccccggatgtc
gtcgaagtgcgcggcgagatctacatggcgaagtcggactttgccgcgctcaatgccgag
atggcggcgcagggcaagccgctctatgtcaacccgcgcaacaccgcctccgggtcgctc
cgacagctcgacgccaaggtgacggcgagccgcaagctccgcttcttcgcctacgcctgg
ggggagatttcggcgatgccggcagacacccagctcggcatggtcgagaccttcaaggcg
tggggcttcccggtcaatccgctgatgcagcgtttctcgtccgcggacgagctgctggag
cactatcaccatatcgagcgcgagcggcccgatctcgactacgatatcgacggcgtggtc
tacaaggtcgatcagctcgacctgcaggcgcgcctaggcttccgctcgcgttcgccccgt
tgggcgacggcgcataagttcccggctgaacaggccttcacgcggctcaagggcatcgac
atccaggtcggccgcaccggcgcgctgacgccggtcgcgcggctggagccgatcaccgtc
ggcggcgtcgtcgtcaccaatgcgaccctgcacaacgaggactatatccgcggcatcggc
aatagcggcgaaccgatccgcgaagggcgcgacatccgcatcggcgacatggtcatcgtc
cagcgggcaggggacgtcatcccgcagatcgtcgacgtggtcatggacgaacgtgccgaa
ggtgcagagccctacaaattcccgaccacatgccctgtctgcggcagccatgcggtgcgc
gacatcaacgaaaaaaccggcaaggtcgatgcggttcgtcgctgcaccggcggtttcgtg
tgccgggcgcaggcagtcgagcacatgaagcacttcgtctcgcgcaacgccttcgacatc
gaggggctcggatccaagcagatcgagttctttttcgaaagcgaagacgagaatctgagg
attcgcactgcgccagagatcttcacgcttgagcgtcggcaggaggcctcgctcaccaag
ctggaaaacatcgagggctttggaaaggtcagcgtcagaaagcttttcgatgcgatcaag
aatcgacgctcgattgcgctccaccgtttcatctatgcactcggtatccgccatgtgggc
gagacgacggcgaagctgctcgcgcgctcctatggcagctacgatcactttggcgcggcg
atggtcgaggctggcagctttgccggcgacgcctggaacgagctcaacagcatcgacggc
atcggcgaggtcgtcgcccgtgcgatcgtcgagttctacaaggaaccgcgcaatgtcgag
gtcgtctcgcggctcctggaagaagtgacgccggaaagcgccgagatgcccgtcacaacc
aacagcccggtcgccggcaagacggtggtcttcaccggctcgctcgaaaagatgacgcgc
gacgaggccaaggcgaaagcggaaagccttggcgccaaggtcgcgggctcggtctcgaag
aagaccgacatcgtcgtcgccggtccgggtgccggctcgaagctcgacaaggcccgcgaa
ctcggggtccagaccatggatgaggacgagtggctggcgctgatcggcgggtga
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