Siniperca chuatsi (mandarin fish): 122861810
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Entry
122861810 CDS
T08948
Symbol
traf3
Name
(RefSeq) TNF receptor-associated factor 3 isoform X1
KO
K03174
TNF receptor-associated factor 3
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04620
Toll-like receptor signaling pathway
schu04621
NOD-like receptor signaling pathway
schu04622
RIG-I-like receptor signaling pathway
schu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
122861810 (traf3)
04621 NOD-like receptor signaling pathway
122861810 (traf3)
04622 RIG-I-like receptor signaling pathway
122861810 (traf3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
122861810 (traf3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
zf-TRAF
TRAF3_RING
zf-C3HC4
zf-C3HC4_2
DUF4201
zf-TRAF_2
zf-RING_4
Fez1
Sina_ZnF
Crescentin
MctB
AAA_13
DUF724
FapA
Fzo_mitofusin
ATG16
DUF1664
Snapin_Pallidin
Baculo_PEP_C
UPF0242
KxDL
V_ATPase_I
GAS
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
122861810
NCBI-ProteinID:
XP_044022663
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Position
LG15:complement(29345391..29367348)
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AA seq
591 aa
AA seq
DB search
MSAGRSADGREVQIPLQQVAPSLATPLSVALPSHRPANPWPPSDPTASQGVPAGFLPLHG
GFRDHFVETPETKYCCEACRLVLCQPRQTECGHRFCQSCINDILSHPNPVCPADMEPLFK
DKIFRDVCCHREIMALKVYCRSEANGCQEQMSLHQIPDHLNVCPFFEVPCPLGKCKERMM
RKEIPDHLSWKCKHRETSCEFCMTKMPLTDLQKHKETVCPAFPVSCPNHCSFSSLPRSEL
SSHQHDCPKAQVSCQFHRYGCTFKGLNQDMRQHESTFAAEHLRMMANRNSTLENKVEDVK
GELLERYKVLPALSSRLSELENQNDELREKNRQMEQKLATMQKLMSSHSEKLLEVELELR
SLRMLREEVENLRGMLENVRTRLNALEQGGRNGTGSTTHTLASLETQLNRHDDMLSVHEI
RLADMDLRFQVLETASYNGTLIWKIRDYKRRKQEAVAAKTLSLYSQPFYTGYFGYKMCAR
VYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFKQKVTLMLMDQGPSRKHLGDAFKPDPN
SSSFRRPAAEMNIASGCPLFVSQSVLETGSYIKDDTIFIKVTVDTSDLPDP
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcggggaggagtgctgacggcagggaggtgcagattcccctccagcaggtggcg
ccctccctggccacgcccctctcagtggccctgccctctcaccgaccagccaatccctgg
cctcccagcgaccccactgcttcacaaggtgtccctgcaggtttcctgcctcttcatgga
ggattcagagatcactttgtagaaactccagaaaccaaatactgctgcgaggcctgcagg
ctggtcctgtgtcagccccgccagaccgagtgtggacaccgcttctgtcagagctgcatc
aacgacatcctcagtcatccaaacccggtatgtccagctgacatggagcctctgttcaaa
gacaagatcttcagagacgtttgctgccaccgggagatcatggcgcttaaggtttactgt
cgcagtgaagctaatggctgtcaggagcagatgagtctgcatcagatacctgaccacctc
aatgtgtgtccgttcttcgaggttccctgtccgttgggtaaatgtaaagagcgaatgatg
aggaaagagattcccgaccacctcagctggaaatgtaaacacagagaaaccagctgcgag
ttctgcatgaccaagatgcctctaacagacctgcagaaacacaaagagacagtgtgtcca
gcgttcccagtgtcgtgtccaaaccactgctccttctcttccctgccccggagtgagctg
tccagtcaccaacatgactgtcccaaagctcaggtgagctgtcagttccaccgctacggc
tgcaccttcaagggtttgaatcaggacatgaggcaacatgagtccacctttgcagctgaa
cacctgagaatgatggccaacagaaactccacgttagagaacaaggtggaggatgttaaa
ggtgaattgttggagaggtataaggtgcttcctgctctcagcagtcgtctgtctgaactg
gagaaccagaacgacgagctgagagagaagaaccgacagatggagcagaaactggccacc
atgcagaaactaatgagctctcactcagagaagctcctggaggtggagctagagcttcgt
tctctccgtatgctgagagaagaggtggagaacctgagaggaatgctggagaacgtccgg
acgagactgaacgctctggaacaagggggacgcaatgggactggatccacaacacacact
ctggcatccctggaaactcagctgaatcgacatgacgacatgctgagtgtccacgagatc
cgattggccgacatggacctgcgtttccaggtgctggagacggcgagctacaacgggact
ttgatctggaagatccgcgactacaagagaaggaaacaggaagcggtggcggcaaagaca
ctgtcgctgtactcacagccattttatactggatactttgggtacaagatgtgcgcccgc
gtctacctgaacggagacggcatgggcaaggggacacacctgtcgctgttctttgtggtg
atgaggggcgagtacgacgccctgcttccctggcccttcaaacagaaggtgactctgatg
ctgatggaccagggtccgtcgaggaaacacttgggtgatgccttcaagcctgatccaaac
agtagcagcttcagacgtcctgcagcagagatgaacatcgcctccggctgtcctctcttt
gtgtctcagagcgtcctggagactggcagctacatcaaagacgacaccatcttcatcaag
gttaccgtggatacctctgaccttcctgacccatga
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