Siniperca chuatsi (mandarin fish): 122865199
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Entry
122865199 CDS
T08948
Symbol
traf2b
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04010
MAPK signaling pathway
schu04137
Mitophagy - animal
schu04141
Protein processing in endoplasmic reticulum
schu04210
Apoptosis
schu04217
Necroptosis
schu04621
NOD-like receptor signaling pathway
schu04622
RIG-I-like receptor signaling pathway
schu04920
Adipocytokine signaling pathway
schu05132
Salmonella infection
schu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122865199 (traf2b)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
122865199 (traf2b)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
122865199 (traf2b)
09143 Cell growth and death
04210 Apoptosis
122865199 (traf2b)
04217 Necroptosis
122865199 (traf2b)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
122865199 (traf2b)
04622 RIG-I-like receptor signaling pathway
122865199 (traf2b)
09152 Endocrine system
04920 Adipocytokine signaling pathway
122865199 (traf2b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
122865199 (traf2b)
09171 Infectious disease: bacterial
05132 Salmonella infection
122865199 (traf2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122865199 (traf2b)
04121 Ubiquitin system [BR:
schu04121
]
122865199 (traf2b)
Enzymes [BR:
schu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122865199 (traf2b)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
122865199 (traf2b)
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
122865199 (traf2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-C3HC4_4
zf-RING_6
zf-RING_5
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_4
Sina_ZnF
ATG16
zf-RING_UBOX
TRAFD1-XIAF1_ZnF
Paramyxo_NS_C
zf-C3HC4_5
Motif
Other DBs
NCBI-GeneID:
122865199
NCBI-ProteinID:
XP_044029225
LinkDB
All DBs
Position
LG18:complement(11918498..11931037)
Genome browser
AA seq
520 aa
AA seq
DB search
MARITLDCSNSLPGIPLSVLSVPMENKYKCQRCLQVLRKPVQAQCGHRFCVHCFKQLTSS
GPKPCEACRQEEIYEEPISILNSNEAFPDNAAGREIASLPARCLNQGCDWTGSIKEYEAQ
HEGRCEFERIQCDACQTLILRTEKDRHNERECEARTLNCKYCKVTFNFKDIKAHDEICLK
FPLQCKDCGKKKIPREKFNDHTRSCAKSKSACPFSEVGCKSVIENGKLSDHEHSSTMEHL
RLLLPMVLSMARPRADAPGPGEWQEDSGLGLYRAPEEGVTVGSGAAASVQNVDLDKKVNA
LENIVCVLNREVERSSVTLEAFSHQHRLDQEKIENLTNKVRQLERTLTMRDLQLSETEQL
VRDLQFCTYDGIFVWKISDFSRRRQDAVGGRTPAMFSPAFYSSKYGYKMCLRLYLNGDGT
GRGTHLSLFFVVMRGKCDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDVTSTSFQRPIS
EMNIASGCPLFCPLAKLAGKSPYLRDDTIFIKAIVDLTGL
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaatcacgttggactgttccaactctttaccagggatccccctcagtgtccta
tcagtgcccatggagaataaatacaaatgtcagcggtgtctccaggtcctgaggaagcct
gtccaggctcagtgcggccaccgcttctgtgtacactgcttcaagcagctcaccagttct
gggccaaagccatgtgaagcctgccgccaagaggagatatatgaagaacctatttccatt
ctaaatagtaatgaggcatttccagacaatgcagcaggtcgagaaatagcaagtctgcct
gccaggtgtttgaaccagggctgcgattggacaggctcaataaaagagtatgaggctcag
catgaaggtcgctgtgaatttgagcggatacagtgcgacgcctgccaaaccttaatcctt
cgtacggagaaggacagacataatgagagagaatgtgaagcaagaacactcaactgcaaa
tactgcaaagtgaccttcaactttaaagacatcaaggcccatgatgagatctgtctgaag
tttcccttacaatgcaaggactgtggcaagaagaagatcccaagagaaaagttcaatgac
cacaccaggtcctgcgccaagtcaaagagtgcctgtccattcagtgaagtgggctgtaag
tctgtgatagagaacgggaagctcagtgaccatgagcacagcagcaccatggagcacttg
cgtctgctgctgcccatggtgctgtccatggctcggccgcgtgctgacgctcctggtccc
ggggagtggcaggaggactccggtctgggcctgtacagggctcctgaggagggagtcact
gtgggctctggagctgcagcctctgtgcagaacgtggacttggataaaaaggtgaacgct
ttagaaaacatcgtgtgtgtcctgaaccgagaggtggagcgcagttcagttacattggag
gctttctcacaccaacatcgtttagaccaggaaaaaattgaaaacctcaccaataaagtg
cgtcagctagagcggacactcaccatgagagacttgcagctgtctgaaactgaacagctg
gtgcgtgatctccagttctgcacgtacgacgggatatttgtctggaaaatctctgacttc
tcacgccgcagacaggacgctgtgggtggtcgaacacctgcaatgttctctccagcgttt
tactccagcaaatatggatacaaaatgtgtctgcggctgtatttgaacggcgatgggacg
ggtcgaggaacacacctttcactgttctttgtcgtcatgaggggcaagtgcgatgcgctg
ctcaaatggccattcagtcagaaggtaactctaatgctcttggatcagaacaacagggag
cacattattgatgctttccgccctgatgtcacctccacttcctttcagcggccaatcagt
gagatgaacatcgccagtggctgcccgctgttctgtccactggctaaactggctggcaag
agcccctatctgagagatgatacaattttcattaaagccattgtagacctcacaggctta
tag
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integrated database retrieval system
