Siniperca chuatsi (mandarin fish): 122868143
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Entry
122868143 CDS
T08948
Symbol
irf3
Name
(RefSeq) interferon regulatory factor 3 isoform X1
KO
K05411
interferon regulatory factor 3
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04620
Toll-like receptor signaling pathway
schu04621
NOD-like receptor signaling pathway
schu04622
RIG-I-like receptor signaling pathway
schu04623
Cytosolic DNA-sensing pathway
schu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
122868143 (irf3)
04621 NOD-like receptor signaling pathway
122868143 (irf3)
04622 RIG-I-like receptor signaling pathway
122868143 (irf3)
04623 Cytosolic DNA-sensing pathway
122868143 (irf3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
122868143 (irf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
schu03000
]
122868143 (irf3)
04131 Membrane trafficking [BR:
schu04131
]
122868143 (irf3)
Transcription factors [BR:
schu03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
122868143 (irf3)
Membrane trafficking [BR:
schu04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
122868143 (irf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
122868143
NCBI-ProteinID:
XP_044035777
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All DBs
Position
LG20:complement(13867809..13874655)
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AA seq
466 aa
AA seq
DB search
MSHSKPLLIPWLRDQIDSGRYPGVHWTNPVRIEFSIPWKHALRQDSSDTDILIFKAWAEA
SGNGRAQGDPSVWKRNFRSALRAKGFKLVFDNKNDAANPHKVFRWPDDLASGANSSAGSQ
DQDDPDLFEDIGLPTQESQVVPCFDDCLYLPEQNLFLAESTANQDILQQCLKGLNIGSET
EDTAGFEPPPEQQQLQNPVVIGRHALPGQQQYPVTFEGAVGEAGLPEQPARPMQGAVGGA
CGGQFAEQFLHTMNKTSDRDNFKTQFRISVYYRGVKVSEQLVENEAGVRLVYSPELNGTV
VDHESGLSVVSLPRPGIMLDQTQANLTQRILDKLGDGLDVGVSGHVVYGQRRGEIKAFWS
FSKFDRTTQPQEISKLQPQPLYLFKDFLRGILDFIDGRDCPPCSLFFCLGEKWPDPDNRP
WEKKLITVEVVLTSVELLKNMAVGGGASSLQSVELQMSLEEMMEMY
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtctcattctaaaccactgctcatcccgtggctgcgggaccagattgacagcggcagg
tatcctggtgtccactggacgaaccctgtgcgaatagagttctccatcccctggaaacat
gctttaaggcaggactcctccgacactgacattctcatctttaaggcctgggcagaggcg
agtggcaatggccgggctcagggagacccctcagtgtggaagaggaacttccgcagcgcc
ctccgagccaaaggtttcaaactggtctttgacaacaagaatgatgctgctaacccccat
aaagtgtttcgctggccggatgatttagcatcaggagctaactcttctgctggatcccag
gaccaagatgaccccgatttgtttgaggatattggtcttcctacacaagaaagccaggtt
gtgccgtgctttgatgactgtctctatcttccagaacaaaatttgtttttagcagaatcc
actgccaaccaggatattctccagcagtgtctaaagggactgaacattggctctgaaaca
gaggacaccgcaggctttgagcctcctcctgagcaacagcagctccaaaacccagttgtg
attggtagacacgcgttgcctgggcaacagcagtatccagtaacgtttgagggtgcagtc
ggtgaagctgggttgcctgagcaaccagcacgtccaatgcagggagccgtgggaggggcc
tgtggtgggcagtttgcggagcagttcctacataccatgaacaagaccagtgacagagat
aatttcaagactcagtttaggatatcagtgtactatagaggggtgaaggtgtctgagcag
ctggttgagaatgaagctggggtccgcttagtctacagccctgaactcaacgggacagtt
gtggatcacgagtcaggcctgtccgtggtctctctgccaagacctggaatcatgctggat
caaacccaagccaatctgacccaacgcatcctggacaagctgggtgatggtttggacgtg
ggggtgtcgggccatgtggtctatggccagcgacggggtgaaatcaaagcgttttggagc
ttctccaagtttgacaggaccacacagccccaagagatttctaaactgcagcctcagcca
ctgtacctgttcaaggactttttgcgaggaatactggacttcattgatgggagagactgc
cctccctgctccctgttcttctgcctgggggagaagtggcctgacccagacaacaggcct
tgggagaagaaactcatcacagtggaggtggttctgacttcagtggagttactgaagaat
atggctgttggaggtggcgcttcctccctgcagtctgtggagctgcagatgtcgctcgaa
gagatgatggagatgtactga
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