Siniperca chuatsi (mandarin fish): 122868971
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Entry
122868971 CDS
T08948
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122868971 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
schu03041
]
122868971 (eftud2)
Spliceosome [BR:
schu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122868971 (eftud2)
Complex C
U5 SnRNP specific factors
122868971 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
122868971
NCBI-ProteinID:
XP_044037392
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All DBs
Position
LG21:complement(6514235..6530255)
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AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDEDDLDAEDRDVDEGDDDDDDEPADADDDVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKNKQFTLMEQELPATVYDMEFLAD
LMDGPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVTFSDEVTSSIRISDGVVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNSLLSTYSTDENLVVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTHKFTKKAP
SSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCIQHIPSPQEGARNKIEHTYTGGLDSDLGEAMAECDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatctgtatgacgagtttgggaactacatcggtccagagctggactctgac
gatgatgaagatgatttggatgcagaggacagagatgttgatgagggtgatgacgatgat
gatgatgagcctgctgatgctgatgacgatgtcccgggtatggaggtggttctgcatgag
gacaagaagtactatcctacagcagaggaggtttatgggccagaagtggaaactattgtc
caagaggaagacacacaacctcttacagagccaatcatcaagcctgtgaagaacaagcag
ttcaccctgatggagcaggagttacctgccactgtttatgatatggaattccttgcagat
ctaatggacggtcctgagctaatccgtaacgtcaccctgtgtggtcaccttcaccacggc
aagacctgttttgtggattgcctgattgaacagacacacccagaaatcaggaagagagat
gatgtggatctccgatacacagacatcctctttacagaacaggagagaggagttggtatc
aagagtacccctgtcacaatggtcctgccagactccagaggcaaatcctaccttttcaac
atcatggatacaccaggccatgtgaccttctctgatgaggtcacatctagcatccggatc
tcagacggtgttgtcctcttcatagacgcagcggaaggagtgatgctgaacacagagcgt
ctgatcaaacatgcagttcaggagcgaatggccatcaccatctgcatcaacaaggtggac
cggctcatcgtggaactcaaattgcctcccacagatgcttattataaacttcgccatatt
gtggatgaggtcaatagtttgctcagcacatactccacagatgagaacttggtagtgtct
cctctccttggaaacgtgtgctttgccagctctcagtacagtatctgtttcaccttgggg
tcgtttgcaaagatctactcagacacctatggtgacatcaactataatgagttcgccaag
aggctttggggagacatttatttcaaccccaaaacccacaagttcacaaagaaagctccc
agcagtaactctcagcgcagttttgtggaatttgtcttggagcctctctacaaaatcctc
tcacaggtggttggagatgtggacacatctctcccccgagttctggatgagctggggatc
cacctgactaaagaggaactgaagctgaacatcagacccttgttgaggctggtctgtaat
cgcttctttggagagttcactggctttgtggacatgtgtatacaacatatcccctcacca
caagagggtgctagaaacaagatagaacacacatacacaggaggtctggactcagacctg
ggggaggccatggcagagtgcgaccctgatggtcctttgatgtgccacaccactaagatg
tacagcacagaggatggcgttcagttccatgcatttggtagggtgctgagtgggaccatt
caggcaggccagccagtcaaggttttaggagagaactacacccttgaagatgaggaggac
tcccaggtctgcactgtgggccgtctctggatttcagttgccagataccaaattgaagtg
aaccgagtacctgctggcaactgggttctcatcgaaggttgtgaccagccaattgtcaag
accgccacaatcacagagcccagagggaacgaggaggctcagattttcaggccgctgaag
ttcaacacagcatcagttataaagattgcagtggagcccgtcaacccatcagagctaccg
aaaatgttggacggactgaggaaggtcaacaagagctatccgtctctcaccacaaaggta
gaggagtctggagagcatgttatcttaggaacaggagagctctacctggactgtgtcatg
cacgacctgcgcaagatgtactctgagatcgacattaaagttgctgaccctgttgtgact
ttctgtgaaacggttgtggagacatcatcactcaagtgctttgctgaaacgcctaacaaa
aagaataaaatcaccatgattgctgagcccttggagaaggggctggctgaggacatagag
aacgaagtggtgcagatcacgtggaacaggaagaagctgggagaatttttccagacaaag
tacgactgggatctactggctgccaggtctatctgggcctttggaccggacaccacggga
ccaaatatccttgtagacgacacactgccctctgaggtggacaaggcgctgcttggctca
gtcaaagacagcatcgttcagggcttccagtggggcaccagggaggggcctctgtgtgat
gagcccatcaggaatgtcaagtttaagatcttggatgcagtcattgctcaggagcctctc
cacagaggaggaggccaggtcatccctacagccaggagggtggtgtactccgctttcctc
atggccactccgaggttgatggagccctattactttgtggaggttcaggctccagctgat
tgtgtatctgctgtctacacagtgctggctcgaagaaggggtcatgtcacccaggatgca
cctattcctgggtctcctctctacaccattaaggctttcatcccggccatcgactccttc
ggctttgagactgaccttcgcacacatacacaggggcaggcctttgctctgtctgtgttc
caccactggcagatcgtccctggtgaccctctggacaagagtattgtgatcaggcctctt
gagcctcaacctgccccccaccttgccagagagttcatgatcaagacccgaaggcgcaag
ggtctgagcgaggatgtgagcatcagcaagttcttcgacgatcctatgttgttggagctg
gccaaacaggacgtggtgcttaactaccccatgtga
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