KEGG   Siniperca chuatsi (mandarin fish): 122870319
Entry
122870319         CDS       T08948                                 
Name
(RefSeq) LOW QUALITY PROTEIN: RLA class II histocompatibility antigen, DP alpha-1 chain-like
  KO
K06752  MHC class II antigen
Organism
schu  Siniperca chuatsi (mandarin fish)
Pathway
schu04145  Phagosome
schu04514  Cell adhesion molecules
schu04672  Intestinal immune network for IgA production
schu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:schu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    122870319
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    122870319
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    122870319
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    122870319
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:schu04147]
    122870319
Exosome [BR:schu04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   122870319
  Exosomal proteins of epithelial cells
   122870319
  Exosomal proteins of breast milk
   122870319
SSDB
Motif
Pfam: C1-set MHC_II_alpha Ig_3 C2-set_3 I-set Ig_2 C2-set_2 SusE
Other DBs
NCBI-GeneID: 122870319
NCBI-ProteinID: XP_044040411
LinkDB
Position
LG22:complement(24567275..24572524)
AA seq 242 aa
MKMMKMLVLVLVPVLSCVLCVSADILHQDIGIIGCSDSDGEKMFGLDGEEVWVADFINQK
GVDPQPDFVDHMTCPGAYQQAEADLQICKQNLKVDLQAYKNPPLQRDAPSSPMIYARDDV
ELGEKNHLVCHVTGFYPAPVKIDWTKNGENVTEGTSINVPFPNKDGSFRQMSTLEFVPQL
GDIYSCTVKHLALNQPLTRLWDVKEKTQPGIGPAVFCGLGLTVGLLGVAAGTFFLIKGNE
CS
NT seq 729 nt   +upstreamnt  +downstreamnt
atgaagatgatgaagatgctggtcctggtcctggtcccggtcctctcctgtgtcctctgc
gtctcagctgacattctacatcaggacattggtatcatcggctgttcagactctgatgga
gagaagatgtttggtctggatggtgaagaggtttgggtcgcagacttcatcaaccagaaa
ggagtcgatcctcagcccgactttgtggatcatatgacctgcccgggagcttatcaacaa
gctgaggctgatctacagatctgcaaacagaacctgaaagtggatctccaggcctataag
aaccctcctctgcagcgcgatgctccttccagtccgatgatctacgcccgagacgacgtg
gagctcggagagaagaaccacctcgtctgtcatgtgactggtttctatccggctcctgta
aagatcgactggacaaagaacggagagaacgtgaccgaaggaaccagcatcaacgttccc
ttccccaacaaagacggttccttcagacagatgtccacactggagttcgtcccacagctg
ggagacatttacagctgcacagtgaaacatctggccctgaaccaaccactgaccaggctc
tgggatgtgaaggagaagactcagcccggtattggacctgcggtgttttgtggactcggt
ctgacggtcggtctgctcggtgtggctgctggaaccttcttcctcatcaaaggaaacgaa
tgcagctga

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