Siniperca chuatsi (mandarin fish): 122871614
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Entry
122871614 CDS
T08948
Symbol
cacna1c
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1C isoform X1
KO
K04850
voltage-dependent calcium channel L type alpha-1C
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04010
MAPK signaling pathway
schu04020
Calcium signaling pathway
schu04260
Cardiac muscle contraction
schu04261
Adrenergic signaling in cardiomyocytes
schu04270
Vascular smooth muscle contraction
schu04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
122871614 (cacna1c)
04020 Calcium signaling pathway
122871614 (cacna1c)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
122871614 (cacna1c)
09153 Circulatory system
04260 Cardiac muscle contraction
122871614 (cacna1c)
04261 Adrenergic signaling in cardiomyocytes
122871614 (cacna1c)
04270 Vascular smooth muscle contraction
122871614 (cacna1c)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
schu04040
]
122871614 (cacna1c)
Ion channels [BR:
schu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
122871614 (cacna1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
122871614
NCBI-ProteinID:
XP_044042865
LinkDB
All DBs
Position
LG23:complement(10485170..10706953)
Genome browser
AA seq
2390 aa
AA seq
DB search
MLRGLFQRKPKHERLEEEPEVRFKGLLVSERDLGYTYVRPGGSDYSPPPSLPRPPPPGLT
NEHSGGGSHGDHGGGGGGVNHGVGVVGLAPEHIPTPGAALSWQAAIDAARQAKMMGSVVS
SGGAGLGSGGGGPISTASSTQRKRQHYSSKPKKQTTTTATRPPRALLCLTLKNPIRRACI
SIVEWKPFEIIILMTIFANCVALAVYIPFPEDDSNATNSNLERVEYLFLIIFTVEAFLKV
IAYGLLFHPNAYLRNGWNLLDFIIVVVGLFSAILEQATKGDGGTPIGGKAAGFDVKALRA
FRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFMGKMHKTC
VSENTVTGTIPEEKPAPCAPDGAYGRHCNRNGTVCKMGWEGPNDGITNFDNFAFAMLTVF
QCITMEGWTDVLYWMQDAMGYELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKA
RGDFQKLREKQQLEEDLKGYLDWITQAEDIDPENEEEGMDDDKPRNRVSPAHLGKKTSKL
AWFSHSADSQDGKSHRFQSLRGAVKKNAAFLRKALSMPASENESVNTDNAPGGDVEGETC
CTRLANRISKSKFSRYSRRWNRLCRRKCRAAVKSQVFYWLVIFLVFLNTLTIASEHHQQP
QWLTDVQDIANKVLLALFTGEMLLKMYSLGLQAYFVSLFNRFDSFVVCGGILETILVETK
IMSPLGISVLRCVRLLRIFKITRYWNSLSNLVASLLNSVRSIASLLLLLFLFIIIFSLLG
MQLFGGKFNFDDTRRSTFDNFPQSLLTVFQILTGEDWNSVMYDGIMAYGGPSFPGMLVCI
YFIILFICGNYILLNVFLAIAVDNLADAESLTSAQKEEEEEKERKKLARLASPEKRHNNE
KPPLEEEKKEKIELKSITSDGETNTATKINMDEYCGDESEEKNPYPANDYIGVDDDDEPE
MPVGPRPRPLSDIQLKEKAIPMPEARAFFIFSHTNKFRVLCHKIVNHNIFTNLILFFILL
SSISLAAEDPVKNDSFRNQILGYADHVFTGLFTIEIILKMTAYGAFVHKGSFCRNYFNIL
DLVVVSVSLISSGIQSSAINVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNI
VIVTTLLQFMFACIGVQLFKGKFFLCTDSSKQTQADCRGSYIMYKNGDVGKPKRAQRLWE
NSDFNFDDVLQGMMALFAVSTFEGWPGLLYRAIDSHAEDVGPIYNYRVVISIFFIIYIII
IAFFMMNIFVGFVIVTFQEQGEQEYKNCELDKNQRQCVEYALKARPLRRYIPKNPYQYKV
WYVVNSTYFEYLMFTLILLNTICLAMQHHGQTKNFNDAMNILNMLFTGLFTVEMILKLIA
FKPRHYFVDAWNTFDALIVVGSIVDIAITEVNPADSSSSSSSSSSSSSSSSSSHPPAVRP
MVRSDGNLVRLPTSSTIPPSFHPSIPPPATPTMGLQNSEENARISITFFRLFRVMRLVKL
LSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQMFGKIALRDNTEINRNNNF
QTFPQAVLLLFRCATGEAWQEIMLACSPNQLCEKGSTNENNMSNEDCGSQFAIIYFVSFY
MLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTL
LRRIQPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVMFNATLFALVRTALRIKTEGNLEQ
ANEELRAIVKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQEYFRKFKKRKEQGLV
AKVAPKTALSLQAGLRTLHDIGPEIRRAISGDLTVEEELDKGLKEPVSAASEDDIFRVKR
TGGLFSNHVNYYNQSDGRSSFPQSFTTQRPLHISQKGSPCEGESPSHEKLMDSTTFTPSS
YSSSGSNANINNANNTGMAGVATQGISRFPSPSISTVDGHTGQPLTPILLPRSAWCFPPK
RTYFYDTLMRSDSSDSRLPIIRRGEGSMEETYDESYGEDREYHEDDHSLSSDMLVYHDDT
CKQLTPMEEGEDAEDRRGGGGWQSPRRVFLCPTSLGRRSSFHLECLRRQSRPDVSQKTAV
PLHLVHHQALAVAGLSPLLRRSHSPTLFSRLCSTPPASPTAHGSDASYQRVPSLRLEGSN
SHEKLNTSLPSVNCGPWYSDSNGNSRVPSPSPSMSASNQRPRPVSLTVPSLLGKDSSSLS
HGSAGSLVEAVLISEGLGHFAQDPSFIEATKAELADVCDMTIEEMEHAANNILNGNSATN
TTSSTSSTSQHSGNSNLLPFHAAAATTTQRDRVVSEGGGEAGGTRGSVHEPSSVEERQEL
LAGGRGREEEEEEAEGREEGHHRSSVLIGGARQRNSGLLEDEDMECVTSL
NT seq
7173 nt
NT seq
+upstream
nt +downstream
nt
atgctgagaggcctatttcagaggaaacctaaacatgagagactggaggaggaacctgag
gtcagatttaaaggcttgctggtgtcagagagagacctgggatatacatacgtccgacct
ggaggctccgactactctccccctccttcccttcctcgccctccaccccccggcctgacc
aatgagcacagtggcgggggaagccatggcgaccatggtggaggagggggcggggttaac
cacggggtgggcgtggtgggcctggccccggagcacatccccacaccgggcgcggccctg
agctggcaagcggccatcgacgctgcgcggcaggcgaagatgatgggcagtgtcgtatcg
agcggaggggcggggcttgggtcgggagggggcgggcccatctccacggccagctccacg
caaaggaagagacaacactatagctctaaacccaagaaacagacaacgacaacagccaca
aggccgccacgggccctactctgtctcacgctcaagaaccccatccgcagggcctgcatc
agcattgtagagtggaaaccatttgagatcatcatcctgatgaccattttcgccaattgt
gtggccttagccgtctacatccccttccctgaggatgactcaaacgccaccaactccaac
ctggagcgtgtggagtatctgttcctcatcattttcacagtggaagcattccttaaggta
atagcctacggcctgctcttccaccccaatgcctacctgaggaacggctggaatctgctc
gacttcatcatcgtagtcgtagggttattcagtgcgatcttggagcaggccaccaagggg
gacggcggcactcctattggaggaaaggcagcaggcttcgatgtcaaggctctgagggca
ttcagagtactcagacccctcagactggtctcgggagtacccagtttacaggtagtgttg
aactccataatcaaagccatggttcctctgctccatatcgccctgctggtcctcttcgtc
atcatcatctatgccatcatcggcctggagctcttcatgggcaagatgcacaagacttgc
gtttccgagaatacagtcacaggcaccattccggaggaaaaaccagcaccgtgtgcacca
gacggagcttacggtcgacactgtaaccgtaacggaacagtgtgcaaaatgggatgggag
ggcccaaatgacggcatcaccaactttgacaactttgcctttgccatgttgacggtgttc
cagtgtataaccatggagggctggacggatgtgctgtactggatgcaggatgctatgggc
tatgagctgccatgggtctattttgtctctctcgtcatcttcggctcctttttcgttctc
aatctcgttctgggggtgttgagcggagagttctccaaagagagggagaaggccaaggca
cgtggtgacttccagaaactcagagaaaaacagcaactggaggaggacctcaagggctat
ttagactggatcactcaggctgaagacattgacccagagaatgaagaggagggcatggac
gatgacaaacccagaaaccgagtgtctccagcccacctgggtaagaagaccagtaagctt
gcctggttcagtcactctgctgactctcaggacggtaagagtcatcgttttcagtctctg
cgtggagccgtgaagaaaaatgcggctttccttcgtaaggcgttgagcatgccagccagt
gagaatgaatcagtcaacacagacaacgcccccgggggagacgtggagggggagacctgc
tgtacccggttagcaaataggatctccaaatccaagttcagtcgatactctcggaggtgg
aacaggctgtgtaggagaaagtgccgggcagcggtcaaatcacaggttttctattggttg
gtcatcttcctggttttcctcaacactctgaccatcgcctctgaacatcatcagcagcct
cagtggttaactgatgtgcaagacatagccaacaaagtgttgctagcactcttcactggt
gagatgctgttgaagatgtacagtctgggtctacaggcgtactttgtttcgctcttcaat
cgcttcgacagcttcgtagtatgtggaggaattcttgagaccattctggtggaaaccaag
atcatgtctcctctcgggatctctgtgttacgttgtgtacgcttgctgcgaatcttcaaa
ataaccagatactggaactccctgtccaacctggtggcctccctgctaaactctgttcgc
tccatcgcttccctgttgctcctgctcttcctcttcatcatcatcttctccctgcttggc
atgcagctctttggggggaaattcaactttgacgatacccgacgcagcacctttgacaac
tttccccagtctctgctcactgtgtttcagatccttacaggagaggactggaactctgtg
atgtatgatggtatcatggcgtacggtggaccgtccttccccggcatgctggtttgcatc
tacttcatcatcctattcatctgcggaaactatatcctactgaatgtcttcttggccatc
gctgtagacaatctggcagatgctgagagccttacatccgcccagaaagaagaggaagag
gagaaggagaggaaaaaactggccaggttggccagtccagagaagcgtcataacaacgag
aagccgcctctggaggaggagaagaaggagaagatagagctgaagtccatcacttctgat
ggagagaccaacactgctactaagattaacatggatgagtactgtggagacgagagtgaa
gagaagaacccatatcctgccaatgattacataggagtcgatgatgacgatgagccagag
atgccagtgggcccgaggccgcggccactctccgacattcagctgaaggaaaaagccatt
cccatgcccgaggcccgcgctttcttcatcttcagccacaccaacaaattcagggttctg
tgccataagatcgtcaaccacaacatcttcaccaacctcatcctcttcttcatcctgctc
agcagcatcagtctggcagccgaggacccggtcaagaatgactccttcagaaaccagatc
ctgggctatgcagaccatgtctttactggactcttcacgatagagatcattcttaagatg
acagcctatggagccttcgtccataaaggttcattctgtagaaactatttcaatatcctg
gacctggtggtggtcagtgtgtccctcatctcctctggaatacagtccagtgcaattaat
gtggtgaagatcctgagagtcctacgagtgctcagaccactgagggccattaacagagcc
aagggactaaagcacgtagtgcagtgcgtgtttgtggccatcaggaccatcggcaacatt
gtcatcgtcaccacgttgctccagttcatgttcgcctgtattggagtacaactctttaag
ggcaagttcttcttatgtaccgacagctctaaacaaactcaggcagattgcaggggttcc
tacattatgtataagaacggtgatgtggggaagcctaagagagcccagagactgtgggag
aacagtgactttaactttgacgatgtcctgcaaggcatgatggctctgtttgctgtgtct
acctttgagggctggccagggttactgtaccgagccatagactctcacgctgaggacgtc
gggcccatctacaactaccgcgtggtcatctccatcttcttcatcatctacatcatcatc
attgccttcttcatgatgaacatcttcgtcggtttcgtcatcgtcacattccaggagcaa
ggagagcaagaatataagaactgtgagctggacaagaaccagcgtcagtgtgtggagtat
gctttgaaggcacggccgttgcgtcgctacatccccaagaacccctaccagtacaaggtg
tggtatgtggtgaactccacctactttgagtacctgatgttcacactcatccttctcaac
accatctgtctggccatgcagcatcatggacagaccaaaaatttcaatgatgccatgaac
atcctcaacatgctcttcactggactcttcactgtggagatgatccttaaactgatcgcc
ttcaaaccaaggcattattttgttgatgcatggaacacatttgatgccttgatagttgtg
ggtagcattgttgacatagcgatcactgaggttaacccagctgactcctcctcgtcctcg
tcctcctcctcttcgtcctcctcctcctcttcctcctctcacccccctgcggtaaggcca
atggtacgctctgacggtaacctcgtccgcctccctacctcctccaccatccctccatcc
ttccatccttccatccctcctcctgctacaccaaccatgggactgcagaactctgaagag
aacgccaggatctccatcaccttcttccggctgttccgcgtgatgaggctggtgaagctg
ctgtctcgcggggaagggattcggaccctgctgtggaccttcatcaaatccttccaagca
ctgccctacgtagctctgcttatagtgatgctattcttcatatacgctgtcatcggtatg
cagatgtttggtaagatagcgctgcgggacaacacagagatcaacaggaacaacaatttc
cagacgttccctcaggcagtgctgctgctcttcagatgtgcaacaggtgaagcatggcag
gagatcatgctggcgtgctcgcccaatcagctgtgtgagaaaggctcgaccaatgagaac
aacatgtccaacgaggactgtggcagccagtttgccatcatttactttgtcagcttctac
atgctttgtgcctttctgatcatcaacctgtttgtggccgtcatcatggacaactttgac
tacctgacacgtgattggtcaatcctggggccacatcatcttgatgaattcaagaggatc
tgggctgaatatgaccctgaagctaaggggaggataaagcacctggatgtggtgactctg
ctgcgaagaatccagcctcctctcggctttggaaagctctgtccacacagggtggcctgc
aagcgtctggtgtcaatgaacatgcctctgaacagcgatggaacagtgatgttcaacgcc
acactgtttgccctggtcagaaccgcactcaggatcaagacagaaggtaacctggagcag
gccaatgaggaacttagagcaatagtgaagaaaatctggaagagaaccagcatgaagctc
ttggatcaagtagtgccccctgctggtgatgatgaggtgacagtcgggaagttctacgct
accttcctcatccaggaatatttccgcaagtttaaaaagaggaaagaacaagggctggtg
gccaaggtggcccccaaaactgccctctctctgcaggcgggcctgcggacattgcatgac
attggtccagagattcggagggccatctctggagacctgaccgtggaggaggagctggat
aaaggcctgaaggagcctgtgtcggctgcatccgaggacgatatcttcagggtaaagcgt
acgggtgggttgttcagcaaccacgtcaactactacaaccagagtgatggccgcagttcc
ttcccacagtccttcactacccagcgtcccttgcacatcagccagaagggctccccttgc
gaaggcgagagcccgtcccacgagaagctcatggactcgaccactttcaccccttcctct
tactcttcatcaggctccaatgccaacatcaacaatgccaacaacactggcatggccggg
gtggcgacccagggaatcagtcgattcccaagcccgtccataagcactgtagacgggcac
acaggacagccgctcacccccatcttgttgccaagatcagcgtggtgctttcctccaaag
aggacgtatttttatgacaccctcatgcgctcggactcaagtgacagtcgtctgccaatc
atccgaagaggtgaggggtcaatggaggagacgtatgatgagagctacggtgaagacagg
gagtaccacgaggatgaccactcgctctcctctgacatgctggtgtatcatgatgataca
tgtaagcagttgactcccatggaggaaggagaggatgcagaagacagaagaggaggagga
ggatggcagtctcccaggagagtcttcctctgccccacttctctggggcggagatcgtcc
ttccacctggagtgtctcaggagacagtcaaggccagatgtctcccagaagacggctgta
ccgctacaccttgtacatcatcaggctctggcagtcgcagggttgagtcctctgctaaga
aggagtcactcacctaccctcttcagccggctatgctccacgcctccagccagtcccaca
gcccatggcagtgatgcctcctaccagcgagtgccctctctgaggctagagggctccaac
tcccatgaaaagctcaataccagcttgccctctgtcaactgtgggccatggtacagcgac
agtaatgggaacagccgggtgcccagtcctagccccagcatgtctgcgtccaatcaaaga
ccgcggccggtgtcgctcacagtgccctcactactaggaaaagactccagctcactgtct
cacggcagcgcaggcagtctcgtggaggcggtgctaatatcagagggtttgggtcatttc
gcccaggacccgtcgttcattgaggcgactaaagctgagttggccgacgtctgcgacatg
accatcgaggagatggagcacgccgccaacaacattctcaatggcaacagcgccacaaac
accacatctagcacctcctccacctcccagcacagcggcaacagcaacctcctccccttc
cacgcagcagcagcaacaacaacgcagagggaccgagtggtcagcgagggcgggggagag
gccggaggaaccagaggctccgtccacgagccgtcctcggtggaggagcggcaggagctg
ctagcaggggggaggggacgagaagaggaggaggaagaggcggaagggagggaggagggg
caccacagaagctcggttctgattggaggagcgcgtcagaggaacagcgggctgttggag
gacgaggatatggagtgtgtgacgagtttgtag
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integrated database retrieval system