Siniperca chuatsi (mandarin fish): 122873575
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Entry
122873575 CDS
T08948
Symbol
slit1b
Name
(RefSeq) slit homolog 1b
KO
K06838
slit 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122873575 (slit1b)
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Axon guidance molecules
122873575 (slit1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRR_1
LRRCT
EGF_TEN
LRR_14
LRR_9
LRRNT
hEGF
EGF_Teneurin
EGF_CA
EGF_2
Laminin_G_3
LRR_LRWD1
EGF_DL_JAG
Motif
Other DBs
NCBI-GeneID:
122873575
NCBI-ProteinID:
XP_044046415
LinkDB
All DBs
Position
LG3:3850685..3924181
Genome browser
AA seq
1574 aa
AA seq
DB search
MPAGRSGDGAGSVGCGMAAVAAAPGRAFRSGLRTMLAWGILVLVAGRGGVEACPNPCSCL
GNTVDCHGLGIHSVPKNIPRGTERLDLNGNNLTVISKTDFSGLKHLRVLHLMENQISNVE
RGAFDELKELERLRLNKNRLSQLPELLFQKNEALSRLDLSENFIQAIPRRAFRGATDLKN
LQLDKNHISCIEEGAFRALRSLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNSLRCDC
HLAWLSPWLRQRAALGLYTQCSSPPTLRGLNLAELRKSDFACSGHGGSAFVQPCSLASGS
CPPMCSCSNNIVDCRGRGLTAIPAHLPEAMTEIRLEQNGIKSVPPGAFTSYKKLRRIDLS
NNQISEIAPDAFHGLRALNSLVLYGNKITELPSGVFDGLASLELLLLNANKIHCIRASVF
KDLENLALLSLYDNKIQSLAKGTFSSLHSIQTLHLAQNPFVCDCNVKWLADFLRSNPIET
SGARCASPRRLANKRIAQIKSNKFRCSAKEQYHIPGTEDKRLSYECNSKPVCPAKCRCEA
NVVDCSNLRLTKFPEHLPSSTEELRLNNNDLSVLEATGAFKGLSQLKKINLSNNKISEIE
DGAFEGASSVVELHLTANHLESVKGSMFRGMEGLRMLMLRNNKISCIHNGSFTGLANVRL
LSLYDNQLSTILPGAFDTLPNLSTLNLLANPFNCDCRLSWFGAWLRSRRIVTGNPRCQGP
AFLREIPLQDVAVPDFRCEDGSVLEDSSCALGAQCPSQCTCMDTVVRCSNKHLQALPRGL
PRNVTELYLDGNQFTSVPKELVTFKYLQLVDLSNNKISSLSDDSFSNMSQLTTLILSYNS
LHCIPPLALGGLRSLRLLSLHGNDISELQQGIFSDVASLSHLAIGANPLYCDCRLLWLSD
WVKSGYKEPGIARCAGPRGMEGKLLLTTPADKFQCLGPVEASVQAKCSPCVASPCQNQGV
CQVHHTELYTCTCKSGFTGKHCETPVDACVSNPCTNRGICLSDEQTRGFSCACAFGFHGT
FCEMNVDDCQDHGCENGATCVDGVGNYTCLCPPNYTGLFCEEEEGVCSPGRNPCQHQSTC
VSTPTGPRCVCIPGWVGPDCSIDYNECVDHRCQNGAQCVDHLDGYSCVCPQGYSGEFCEA
ALPPLSLCHLAQCQNGAPCVEKTGTAVCQCLPGFEGQSCEKLVSVNFVDRDSYVQLQDVK
NWPQANITLQVSTAEENGILLYNGDNEPIAVELHQGHVRVTYDPGNQPATAIYSTETVND
GQFHTVELVTFNRMVNLSVDGGEPTTLDSQGRSQPVRGEAPLYVGGMPEEVMPASLGLSS
QTLNTSSFHGCIRNLYINHELQDFTRSHMKPGVVPGCQACRKLYCLRGICQPNAAQGPQC
HCQPGWTGQHCDLPITGGLTGADVVTTATGVSPCEGSKCVKGVCVALDAQTYRCDCEEGY
RGALCNLQGEPAGLCQGLQCLHGQCRETEDGEQCVCEQGYTGESCDIESPCQGEPVRDYH
RLQHGTVLCQTSKPFSWVECRGQCQAGAEPAVTAASCCAPLRVRRRRLTFECDDGTSFTQ
DVEKPVECGCKECV
NT seq
4725 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgggagaagcggggatggagctgggtcagtaggctgtgggatggcggcagtg
gcagcggccccaggccgggcttttcggtctgggctgcggacgatgttggcgtggggcatc
ctggtgctggtggcaggacggggaggcgtggaggcgtgccccaatccctgcagctgcctg
gggaacacggtggactgccatggcctggggatccactctgtacccaaaaacatccccaga
gggactgagaggcttgatctgaacggaaacaacctgacagtcatcagcaagacagacttc
tctggtctcaaacacctcagagtccttcatctgatggaaaaccagatcagtaacgttgag
agaggagcttttgatgaattgaaggagctggagagactccgtctcaacaagaaccgtctc
agccaacttccagagctgctgtttcagaagaatgaagccctgtctcgactggacctgagt
gaaaatttcatccaggccatcccgaggagggccttcagaggagccacggacctcaaaaac
cttcagctggataaaaaccatatcagctgtatagaggagggggcgtttagagctctgcgg
tctctggaagtactcaccctgaacaacaacaacatcagtagcattccagtttccagtttc
aaccacatgccgaagcttcgcacctttcgtctccactctaactctctgcgttgtgactgt
cacctggcctggttgtctccatggctgcggcagcgggcggctttaggcctctacactcag
tgcagctcccctcccaccctgaggggcctcaacctcgccgagctgcgcaagagcgacttt
gcctgctcaggccacggcggcagtgccttcgttcagccgtgcagcctggcgtccggctcc
tgtcctccgatgtgttcctgcagcaacaacatcgtggactgtagagggaggggcctcact
gccatccctgcccacctccctgaggccatgactgagatacgtttggagcagaatggcatc
aagtcggttcctccgggcgccttcacctcctacaagaagcttcgccgaatagacctgagt
aacaaccagatatctgagatcgctcctgatgctttccatggcctccgagctctcaactcc
ctggttctgtatggtaataagatcactgagctgcccagcggagtgtttgatggcctggcc
tctctggagctgctgttgctgaatgccaataagatccactgcatcagagcctcagtgttc
aaagatttggagaacttggctctgctgtcgctgtatgacaacaaaatccagagtctggca
aaaggcaccttcagctcactgcacagcatccagacactccacctggcccagaaccccttc
gtgtgtgactgtaatgtgaagtggctggccgacttcctgcgttcaaaccccatagagacc
agcggagcgcgctgcgccagccctcgtcgtctcgccaacaaacgcatcgcacagatcaag
agcaacaagttccgctgttccgccaaggagcagtaccacattccaggtactgaggacaag
cgtctgagctatgagtgcaacagtaagccggtgtgtcctgctaagtgtcgctgtgaggca
aacgtggtcgactgctccaacctccgcctcaccaagttccctgaacacctgccctcctcc
actgaagagctgcgtctcaacaacaacgacctctctgtgctggaggccaccggagccttc
aagggcctgtcgcagctcaagaaaataaacttgagcaacaacaagatctcagagattgag
gacggggcgtttgaaggtgcctcctcggtggtggagcttcacctgacagccaatcacctg
gagtctgtgaaagggagcatgtttagaggcatggagggactacgtatgctgatgctgagg
aacaacaagatcagctgtatccataatggcagcttcacaggtctggccaacgtcaggctg
ctctccctgtatgacaaccagctgagcaccatcctgcccggagccttcgacaccctgccc
aacctctccacactgaatcttctggccaatccgtttaactgtgactgccgtctgtcctgg
ttcggggcgtggcttcggagccgacgaatcgtgacagggaatccccgctgccagggcccc
gccttcctccgagagatcccactgcaggatgtagccgtacctgacttccgctgcgaggat
ggctctgttctggaggacagcagctgtgccctgggggcgcagtgtccgagtcagtgtacc
tgtatggacacagtggtccgctgcagcaacaaacacctgcaggctttgcccagaggactt
cctcgcaacgtcactgaactgtatctggatggtaaccagttcaccagtgttcctaaggag
ttagtcactttcaaatacctgcagcttgtagatctgagcaacaacaaaatcagctccctg
tctgatgactccttctccaacatgagccagctcaccactctgatcctcagttacaactct
ctacactgtatccctcctttggcactgggtggcctgcgctcgctgagactgctctctctc
catggcaacgacatctccgagctgcagcagggcatcttcagcgacgtggcctccctgtct
cacctagcgattggagccaaccctctgtactgtgactgtcgtctgctctggctgtcagac
tgggtgaagagcggctataaggagcccggtattgcccgctgtgccggtccccgcggtatg
gaaggcaagctgctgctcaccactcccgccgacaagttccagtgtctgggtccggtagag
gcgtctgttcaggccaaatgcagcccatgtgtggcctctccatgccagaaccagggtgtc
tgtcaagtccaccacacagaactgtacacctgtacctgcaagtctggcttcacgggtaaa
cactgtgagactccagtcgatgcttgtgtcagtaatccctgcaccaacagaggaatctgt
ctaagtgacgaacagaccagaggattcagctgtgcatgtgcatttggtttccatggtact
ttctgcgagatgaatgtggacgactgtcaggaccacggatgtgagaacggtgccacctgt
gtggacggagtgggcaactacacctgcttgtgtcctccaaactacacaggtctgttttgt
gaggaggaggagggtgtgtgttctccaggtagaaacccctgtcagcatcagtccacctgc
gtcagcactccaaccggccccaggtgtgtgtgtattccaggctgggtggggccagactgc
agtatagattataatgaatgtgtggaccatcgatgtcagaatggagctcagtgtgtcgac
catctggacggctacagctgcgtctgtccacagggatacagtggtgaattttgtgaggcg
gcccttcctcccctgtcactctgccatctggctcagtgtcagaacggcgccccctgtgtg
gagaagacggggactgcggtctgtcagtgtctgccaggctttgagggtcagagctgtgag
aagctggtcagtgtcaactttgtcgacagagattcgtacgttcaactccaagacgtcaag
aactggcctcaagccaacatcacactgcaggtgtcaacagcagaggaaaacggcatcttg
ctctataacggagacaacgagccaatcgctgtggagctccatcaaggtcatgtaagggtc
acatatgaccctgggaaccagccagccactgctatctacagcactgagacggtgaacgac
gggcagtttcacacagtagagcttgtgacctttaatcggatggtgaacctgtctgtggac
ggaggagagccgacgactctggacagtcagggccggagccagccggtgaggggggaggcg
cctctgtacgtaggaggtatgcctgaggaggtgatgcccgcctctctgggtctctcctct
cagaccctcaacacatccagtttccacggctgcatcaggaacctctacatcaaccacgag
ctgcaggacttcacccgcagccacatgaagccgggggtggtgccgggctgtcaggcctgc
cgcaaactctactgtctgcgcggcatctgccagcccaacgctgcgcagggtccccagtgt
cactgccagccaggctggacaggacaacactgtgacctgccaataacaggaggacttact
ggagcggatgttgtcaccacggcaaccggtgtgagcccatgtgaaggcagcaagtgtgtg
aagggtgtgtgcgtggcattggacgcacagacgtaccgctgcgactgtgaggagggatat
cgcggtgcgttgtgtaatctgcagggggagccggcgggtttgtgccagggtctgcagtgt
ttgcatggccagtgtcgcgagacagaggacggagagcaatgcgtctgtgagcagggatac
accggagagagctgtgacatagagtccccgtgtcaaggtgagccggtgagagattaccac
cggctgcagcacgggaccgtcctctgccagacctccaagcccttctcctgggtcgaatgt
cggggtcagtgccaggcgggagccgagccggccgtcaccgccgcgtcctgctgcgctcct
ctgagggtcagacgccggcggctcaccttcgaatgcgacgacgggacctcgtttacgcag
gacgtggagaagcccgtggagtgtggctgcaaggagtgtgtgtag
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