Siniperca chuatsi (mandarin fish): 122874252
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Entry
122874252 CDS
T08948
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 4 subunit alpha B-like
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
schu04040
]
122874252
Ion channels [BR:
schu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
122874252
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
122874252
NCBI-ProteinID:
XP_044047788
LinkDB
All DBs
Position
LG4:33305711..33364667
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AA seq
1701 aa
AA seq
DB search
MTSRKNSFFEFWRSKKERGALLRRANQLRLLPSQLRRLLGDSGVRAALQNGKMASLLPPV
GTEVFRCFTLASLGEIQRRHEAEEKERQKRKKNKEVVDNDLSEPASDLEAGKPLPFIFGD
PPPELLNTPLEELDPYYQSQKTFIVLSKGNILHRFNAEPACYLLSPFSPLRTVAIKILIH
SLFSFFIMVTILTNCVFMTMSNLPAWSKTVEYVFTAIYTFDTIIKVVSRGFCVGNFTFLR
DPWNWLDVMVISTAYLTEFVYLGKVSVLRTVPRVLKIMTVIPGLKKTVGALVQSVKRLAG
VTVLTVFGLSILALLGMQLFMGSLKHKCVMLPWPSNLSETGSSDFDFNEYISEPENAYFL
PDHFDALLCGNRSDAGVCPEGYVCLKTGRNPNYGYTSYDTFGWSLLSMFRLMTQDFSENL
VQMTLRAAGKTHLIFMVVIFPSCFCLLSLVLAVVAVASGKQEEDGVAEAKQKEEEFSQIL
KALKKGEEEEQAACREELSEKQDGENRKSHKQTYTAMEEFEEDRRSCPPCWFVFADLLLK
WNCCGCWRWLKQWLYTFIMNPFFDLGIVICLVLSTVCMAMDHYPMTKVFSCQLRVAHLIF
TAIFAAEMIVKLLAMDPYGYFQVGWNVFDSIIVGISLLELYMDEVGCFLVIRVFRLARWW
PTMHMLIKIIMTSVRAVWNLTLILLIMVFIFSIVGMQLFQKEYKDYVCSIAIDCKLPRWH
MNDFFHTFLLIFRVLCGEWIETMWDCMEVSGQTMCLIFFVMVLVIGNLLVLNLFLTLLLS
SFISDSPEKKEKNNLQIAISLINKAVAWKKTWILEHIWTLLGKKNHVNPDHTAVASKEDN
RKEFLALSFVTSEQPVSEVKALSGNHGNLTSNYPNIESQRVAIAAAEIELEFKTSENEEE
KKQKCDDMQKHPEVQQDEDDEDHKGNTPEDCCSNKCYRCCPFLDIDTSQGRGRVWSNFRR
ACFSIVQHKYFETFIIFIILLSSGALVFEDIHLQHRRVLKMVVEKADQVFTYLFLLEMLL
KWIGFGLKKYFTNAWCWLDFLILQVSLVSLTADMLGFSQLGAIQSLRTLRALGPLRALSR
FQGLRVVVRALVWTIPSLCKGLLVFLVVWLIFSMLGVYLFAGKFYYCFNETSEEMFFPEQ
VDNKNECLSLMANYTEVRWKNTKLNYDSVLNGYLSLLHLAASADWNGIMYAAVDSRQVES
QPVYEYNLNMYLYFISFIIISFFTFNLLIRLIINNLQRDKFGGKHIFTTEEQQKHYKAVK
KLFSRKPVPRPQDQCQAQLFDLVTKPSFEVFMFVLICLNMVALLVETDEQSWEKEFILKW
VHILFVIIFFTEFILKIIALRQHYFTDGWNILDFVVIIVSIVGMFFAEVMEKYIFPQAFF
PVLRLARIGRILHLIRCARGIQKLLLAFMMSLPALFNIGLLLFIMMFTFSIFGMFNFAYV
KKEAMIDDMFNFETFGNSMICLFMITTSAGWGGLLSPIMNTPPDCNPNIENPGSMVRGNC
GSPVVAIVFFTSYIVLSFLLMVHLYIAVILETSTXEDTEPLCDDDLQMFYKTWRKFDPDT
SQCIQYSKLSDFCDTLQDPLKIPKPNTIKLIHMDLPLLPGDKIHCVDVLLALTAQVLGDS
EEMDTLKVRMEEKFMANPSKVSYEPISSTLRRKQEEVAATVIQREYRKHLRQHRDAEETE
VESVDVGGGVSDSSRPGGALD
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtagaaaaaattcattttttgagttctggaggagcaagaaggagagaggagct
cttctgaggagagccaatcagctaagacttcttccttcacagctgaggcggttgctaggt
gacagtggagttcgggcggcactgcagaatggcaagatggcgtctctgctgccccctgtt
ggtacggaggtcttcagatgcttcacactggcctcactgggggagatccaacgacgacat
gaagccgaggagaaggagcgacagaagaggaagaagaacaaagaggtagtggataatgac
ctgtctgaaccagccagtgacctggaggcagggaagcccctcccattcatctttggggac
ccgccgcctgagcttctcaacaccccattggaggagctggatccctactaccaatcacag
aagacgttcattgtgctcagtaaaggaaacatcctccacaggtttaatgctgagccggcc
tgttacctgctgagtccgttcagcccactgaggactgtcgccatcaagatcctcattcac
tctttattcagtttcttcatcatggtgacgattctgaccaactgtgttttcatgacgatg
agcaatcttccagcatggagcaagactgtggaatacgtgttcacagccatctacacgttt
gacaccatcataaaggttgtgtccagaggcttctgtgtcggaaacttcaccttcctcaga
gacccctggaactggctggatgtcatggtcatcagcacggcatatctgacagagtttgta
tatttggggaaagtttctgtgctgaggacagttcctcgagtgctgaagatcatgacagtc
atcccaggtctgaagaagactgttggagctctcgtccaatcagtgaagaggcttgctggt
gtcactgtcctgacggtgttcggcctcagcatcttggctctgttgggtatgcagcttttc
atgggaagtctgaagcacaaatgtgtcatgctgccgtggcctagcaacctgtccgaaaca
ggaagcagtgatttcgatttcaacgagtacatcagcgaacctgagaacgcctacttcctg
cctgatcactttgatgctctgctgtgtggaaacagatctgacgccggggtctgcccggag
ggttacgtctgtctgaagacagggagaaacccaaactacggctacaccagctatgacaca
tttggttggtctctgctgtccatgttcagactgatgacccaggacttctcggaaaacctg
gtgcagatgacgttacgagcagcaggtaaaacccacctgatcttcatggtcgtcatcttc
cccagctgtttctgcctcctcagcctcgttctagctgtggttgccgtggcgtccggcaag
caggaggaggacggcgtcgccgaggccaaacagaaggaagaagagttcagtcagatcctg
aaggcactgaagaagggagaggaagaggagcaagcagcctgtagggaggagctctcagag
aaacaagatggtgaaaacaggaagagccacaagcaaacatacactgccatggaagagttt
gaggaggaccggaggtcgtgtcctccatgttggtttgtcttcgccgacctcctcctgaag
tggaactgttgtggttgttggcggtggctcaaacagtggctctacaccttcatcatgaac
ccgttcttcgaccttgggatcgtcatctgcctcgtcctcagcactgtctgcatggccatg
gaccattatccaatgacgaaggtgttttcatgtcagctgagagtcgctcatctgatcttc
acagcgatcttcgcagctgagatgatcgtcaaacttttggccatggacccgtacggatat
ttccaggtgggctggaacgtctttgacagcatcatcgtcggcatcagtctgctggagctg
tatatggacgaagtcggctgcttcctagtgatacgagtgttcaggctggccaggtggtgg
ccgaccatgcacatgttgataaagatcatcatgacctcggtaagagcagtctggaacctg
actctcattctgctcatcatggtcttcatcttctccatcgtcggcatgcagctgttccag
aaagagtacaaagactacgtttgcagcattgcaatcgactgcaagcttcctcgctggcac
atgaacgatttcttccacaccttcctcctcatcttcagggtcctgtgtggagagtggatt
gagaccatgtgggactgcatggaggtctcaggtcagaccatgtgtctcatcttcttcgtg
atggtcctggtcatcggaaacctgctggtcctgaatctgttcctgaccttgttgctgagc
tcgttcatcagtgatagtccagaaaaaaaggaaaaaaacaacctgcagatcgccataagc
ctgatcaacaaggctgtggcctggaaaaagacttggatcctggaacatatctggactttg
ctgggaaagaagaaccatgtcaacccagaccacacagcggtcgccagtaaggaagacaac
aggaaggagttcctggccttgagctttgtgacttcagaacagccagtgtcagaggtcaag
gccctcagcggtaaccatggcaacctgaccagcaactaccctaacatcgaatcccagagg
gttgccatcgctgcggccgagatcgagctcgaattcaagacgtctgaaaatgaagaagag
aaaaagcagaaatgtgacgacatgcagaaacatcctgaagtccagcaggacgaagacgat
gaagatcataaaggaaacacacctgaggactgctgcagcaacaagtgttaccgttgctgt
ccattcctggacatagacacgtcccagggcagagggagggtctggtctaacttcaggaga
gcatgtttctccatcgtacaacacaaatactttgagaccttcatcatcttcatcatccta
ctgagcagtggagctctggtgtttgaggacattcacctgcagcaccgtcgggtcttaaag
atggttgtggagaaagcagaccaggtgttcacctacctgttcctgctggagatgctcctc
aagtggattggcttcggactcaagaaatacttcaccaacgcctggtgctggctcgacttc
ctcatcttacaggtgtctctggtgtctctgacagccgacatgttgggattttctcaactg
ggagccatccagtctctgaggactctgagagctctggggcccctgagggccctgtctcgc
ttccaggggctgcgggtggtggtgcgggctctggtctggaccatcccgtccctgtgtaag
gggctgctggtgtttctggtcgtctggttgatcttcagcatgctgggagtttatctgttt
gctggaaagttttattactgtttcaatgagacgtccgaggaaatgttctttcctgagcag
gtggacaacaagaacgagtgtttgtctctgatggctaactacaccgaggtccgctggaag
aacacaaagttaaactacgacagcgtgttgaacggttacctgtcgctgctgcacctggcg
gcatcagcagactggaacggcatcatgtacgcagctgtggactccagacaggtggagtct
cagccggtctatgagtacaacctgaacatgtacctgtacttcatctctttcatcatcatc
tccttcttcaccttcaacctcttgatcagactcatcatcaacaacctgcagagagacaag
tttggagggaaacatattttcacaacagaggagcagcagaaacattacaaggctgtgaag
aaactgttctccaggaaacctgttccccgacctcaggatcagtgccaggctcagctcttt
gacctggtgaccaagccgtcttttgaagtcttcatgttcgtgttgatctgcctgaacatg
gtggctctattggtggagacggacgagcagagctgggagaaagaattcatcctgaaatgg
gtccacatcctctttgtcatcatcttcttcacagagtttattctgaagatcattgcgctc
agacagcactacttcacagacggctggaacatcctcgactttgtggtgatcatcgtgtcc
atcgtaggcatgttctttgctgaagtaatggagaagtacattttcccgcaagctttcttc
cctgtgctccgattggctcgtataggtcgtatcctccatctcattcgctgtgccaggggt
atccagaagctgcttttggcctttatgatgtcacttcctgccctcttcaacattggcctc
ctcctcttcatcatgatgttcaccttctccatcttcggcatgtttaactttgcctatgtg
aagaaggaggccatgatcgacgacatgtttaactttgagacgtttgggaacagcatgatc
tgtttgtttatgatcaccacgtcagctggatggggcggtctgctgagtcccatcatgaac
acacctccagactgcaatcccaacatagagaacccaggatcgatggtcagagggaactgt
ggcagcccggtggttgccatcgtattcttcacttcctacattgtcctgtccttcctactt
atggtccacctgtacattgccgtcatcctggagacttcaactntagaggacaccgagcca
ctgtgtgatgatgacctccagatgttttataagacctggaggaagtttgaccccgacacc
tcgcagtgcattcagtacagtaagctgtcagatttctgcgacactctgcaggatcctctg
aagattcccaaaccaaacaccatcaaactgatccacatggatctgcctctacttcctgga
gacaagatccactgtgtggacgtccttcttgcactcactgcacaggtgttgggtgattca
gaagagatggacactcttaaagtcagaatggaggaaaagttcatggccaacccgtccaag
gtgtcgtatgaaccaatcagcagcaccctgcggagaaaacaggaggaggtggcagcaacg
gtgatccagagagagtacaggaaacacctccggcagcacagagatgcagaggagacggag
gtcgagtctgtggatgttggcggtggtgtttcagattcctcccgcccgggtggagcttta
gattga
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integrated database retrieval system
