Siniperca chuatsi (mandarin fish): 122888287
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Entry
122888287 CDS
T08948
Symbol
smg6
Name
(RefSeq) LOW QUALITY PROTEIN: telomerase-binding protein EST1A
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122888287 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122888287 (smg6)
03032 DNA replication proteins [BR:
schu03032
]
122888287 (smg6)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
122888287 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
122888287 (smg6)
DNA replication proteins [BR:
schu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
122888287 (smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
122888287
NCBI-ProteinID:
XP_044078504
LinkDB
All DBs
Position
LG14:15982401..16001468
Genome browser
AA seq
1671 aa
AA seq
DB search
MANELDRVRISAAELRAETSNSSNITDCQKEEQQEHRVHKQQRRREGKRTDLQRFQSVAG
HGRCHRDSEEGEPGQSDPLAADLYEHDQPSQSEKKGAPEKVLERHGCTDDGTSTDKREED
RMRGDGSNTQNCRKGSRSQSKTEANQAIGFVENDREHQEPAGAAKPTKKARKPDREFYQP
GSRRNIQGKDCGIGREQDKPPSRKHEQKTEPESQLSTGEREGNKKMSTHKQGGKDIKGIQ
ENVKLSKSSETNRKQRSRDVEKPPLPSNASVEKITSKVEKLSVKEKGKVGHEGQDIEELS
YRREETTDKERRGQGGGTKEEEEKVEKKREKGNRRLRGGEKEKRXNQDSRRGEDEVGGGG
KSDRGKTEKERDRRAAESDRDNKPGKTVETHQSKGRENRRESRRGDNNNRSRDVEKDAKM
QRNVDSAVERGERNKFNANITTPTSKRYSRSDIRRSRNRTYSSSSASSVTSLDGPGLRMD
VESTKWPHLEPRHNNKEGIANSREGRRSNLQSWTTNGESSTESLEGSEMSDIAEDRGRRK
RGGEEELSAESRREERNRSKGDKGGGRGILRVSLEKQSGTSSHGGVAQHRKQGLVPRGRG
GGILVLPARTDISNSPEVGQRLLFGGIRGGAACRSRGGRGGGMRRLWDPNNPDQKPALTS
TQSSQHSSLQQPIYLQTGTGYGQLHFLDTDDEVAGSPPVPQGEHFRSKQAAAMAYYKFQN
SDNPYCYPMPTSNMHNPGTTTSQRYPYPYHMGPYQMAPSNGIYPGGPGVGQFCGSYRGAG
YSQPGAGSGLTFEEVEQQARGELVRLLRAADAQELQLSNLLSRDRVSADGLDRMAQLRAD
LLGLYEQVILTDIEFSDSQCADQALWKNVFYQVIERFRQLLKDPTYDNTPHIRNMLLTLL
DEGALFFDALLQKLQTVYQFKLEDYMDGMAIRARPLRKTVKYALISAQRCMICQGDIARY
REQASDSANYGKARSWYLKAQQIAPKNGRPYNQLALLAVYTKRKLDAVYYYMRSLAASNP
ILTAKESLMSLFEEAKRKAEQLERRRRQEHEGGSRGPAVRGRGRGEDGARVEIWIRPSGQ
AANPSSQRGGSESSRDSEQDGELGSLSTSDLNKRFILSFLHAHGKLFTKVGMESFPGVAS
RVLQEFRTLLQHGPSLLGSTHMLQIITINMFTIHNAHNRGEEGEVRPILQEQSTALGLGM
FALLVQRCTELLRDTPAEPVHMADGEEEDKGEELEGMVRVSAFPLDLRELLPSIKVWSDW
MLGHPDLWNPPPCSIDCCPDVWQCLADLCNMLARVDHEEVPLYKVDTDESEGDEELTVLQ
LKEDRLLAGFVPLLAAPQEPCYTDRHTDMAIAADCKRVTVLKYFLEALCGQEEPLLAFKG
GKYISVATSPPASHSMDTRSRQDSLTEKEADDVIVEAESSPSASEGEEDAEDAGDSENDI
RQLKARRHALTNKLAQQQKRRDKIQAVLQTGGQLELEVRPLFLVPDTNGFIDHLGGLKKL
LQCGTYIIVVPLIVITELDGLAKGQDNFGGGVGSGGRGTGSRGNYNVTAAHVRSVQEKAR
LAVAFLEKGFEAREPYLRALTSRGNQLESIAFRSEDTSGQQGNNDDVILSCCLNYCKDKA
KDFMPDQRNGTVRLQREVVLLTDDRNLHVKALTRNVPVRDIPAFLSWAKVG
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgaactggacagagtgcgaatctcagctgcggaactccgagctgaaacgtcg
aactcaagtaatattactgactgtcagaaagaggagcaacaggagcatcgtgtacacaag
cagcaaaggaggcgtgaaggaaagcgaactgatttgcagcgcttccagtcggtagctgga
catggacggtgtcaccgtgacagtgaggagggagaacctggtcaaagtgatcccctggcc
gctgatttatatgagcatgatcaaccatcacagagtgagaaaaagggtgcccctgaaaaa
gttttagaaagacatgggtgcacagacgatgggacgagtaccgacaaaagggaagaagac
aggatgagaggtgacggtagtaacactcagaactgtagaaagggcagccgctcacagtct
aaaacggaagcaaatcaagcaataggttttgttgaaaatgacagagaacaccaggaacct
gctggagctgctaagccgacaaagaaagcccgcaaaccagaccgggaattttaccaacct
gggagccggaggaacattcagggaaaggactgtggaattggaagagagcaggataagcct
ccctctaggaagcatgagcagaaaactgaacctgaatcccagttaagtacaggggaaagg
gaggggaacaaaaaaatgtctacacataagcagggaggaaaagatataaaaggtatacag
gaaaacgtaaaactgtctaaatccagtgagacaaaccgaaagcaacgaagccgagatgtg
gaaaaacctccattaccctctaatgcttcggtggagaaaattactagcaaagtagaaaag
ctcagcgtgaaagaaaagggtaaagtgggacatgaaggccaagatattgaagagttaagt
tacaggagagaggaaacgactgataaggaaaggagaggccaagggggaggaacaaaagag
gaggaagaaaaggtagagaagaagagggagaagggaaatcgcagacttagaggaggggag
aaggaaaagaganggaatcaggattctagaagaggagaagatgaagtaggtggtggagga
aagagcgaccgggggaaaactgagaaggaaagagacaggagagcagcagaatcagacagg
gataacaaaccaggtaagacagtagagacacaccaaagcaaaggaagagagaatcgcaga
gaaagcagaagaggagacaacaacaaccggtccagagatgttgagaaagatgccaagatg
caaagaaatgtagacagtgctgtagaaagaggtgaaagaaacaaattcaatgcaaacatc
acaacaccaacatcaaaacgctattccagatcagatattcggcgctcacggaatcgaact
tacagtagtagctcagccagcagtgtgaccagcctggatggtcctggactaagaatggat
gtggagagtaccaagtggccacacttggagcctaggcacaataacaaagaggggattgct
aatagtagagaaggacgaaggagtaatttacaaagctggacaaccaatggggaatcatct
acagaatcattggaagggagtgagatgagtgacatagcagaagatagaggaaggagaaaa
agaggtggggaggaagagctaagtgcagagagccggagggaagaaaggaacagatcaaag
ggggacaaaggtggaggtcggggaatcctaagggtttctctagaaaaacagtcgggtact
tcgtcacatggtggggttgcccaacatcgcaagcaaggcttggttcctcgtggcagaggt
gggggtatcctggtgcttccagcccgcacagacatctctaattcacctgaggttgggcaa
aggcttctttttggtggaattaggggaggagcagcttgcaggagtagaggaggcagagga
ggaggaatgagacgactctgggatccaaataacccagaccagaaacctgctcttaccagc
acccagtcttcacagcattcatctctccaacagcctatatatcttcagacagggactgga
tatggacaacttcactttctggacacagacgatgaggtagcaggcagtcctccggtcccg
cagggtgagcactttcgatccaagcaggctgctgccatggcctactacaaattccaaaac
tctgacaacccctactgttaccccatgcccaccagcaacatgcataatcctggcaccacc
accagccagcgctatccatatccctatcatatggggccctaccaaatggctccctctaac
ggtatataccctggtggccctggtgtgggccagttctgtgggagttacaggggagcaggt
tattcccagccaggtgcaggaagtggtttgacatttgaagaggtggagcaacaagccaga
ggggagctggtgaggttgctgagggctgcagatgcacaggagctccagcttagtaacctg
ctgtccagggacagagtgagtgctgatggactggatcgcatggcccagctcagagctgac
cttttggggctatatgagcaggtcatcctgacagacatcgagttctcagactctcagtgt
gcagatcaggctttgtggaaaaacgtcttttaccaggtcatagagcgcttccggcagtta
ctcaaagaccccacctatgacaacacccctcatatcaggaacatgctgctcacgctgctt
gatgagggagcactattctttgatgcgctgcttcagaagctgcagacagtgtaccagttt
aagttagaggattacatggatggcatggctatcagggctcggccattgcgcaaaacggta
aagtatgcacttatcagtgctcagcgctgcatgatttgtcagggagatatagcacgttac
cgggaacaagccagtgactcggccaactacggcaaggctcgcagctggtacctgaaagcc
caacagattgcccccaaaaatggacgaccatataaccagctagccctgctggcagtctat
acaaagcggaagttggatgctgtgtattattacatgcgcagcttggcagcttccaacccc
atcctgactgcaaaggaaagcctgatgagtctgtttgaggaagctaagcgtaaggcagag
cagcttgagcgaaggaggaggcaggagcatgaaggaggctccaggggtccagcagtaaga
ggaagaggaagaggggaagatggagcacgtgtggagatttggattcgccccagcggacaa
gcagcaaacccatcctcgcagagaggaggcagtgaatccagcagagactctgaacaggat
ggagagctgggcagtctcagcactagtgatctaaataagagattcattctgagtttcctg
cacgcacatggaaaactcttcactaaagtgggcatggaatccttcccaggagtggctagc
cgtgttttgcaggagttcaggacgctgctccagcatggcccttccctactgggcagcaca
cacatgctgcagattatcaccatcaacatgttcaccattcacaatgcccacaacagaggt
gaagaaggagaagtgcggcccattttacaagagcaaagcactgccctgggtcttggcatg
tttgcactactggtgcagcgctgcacagagctgctcagagatactcctgcagaaccagtc
cacatggcagatggagaggaggaggataaaggggaggagctggagggtatggtgagggtc
tctgccttcccattggaccttagagaactactgccaagcatcaaggtctggtctgactgg
atgttgggacacccagacctgtggaacccaccaccatgcagtatagattgctgccctgat
gtttggcagtgcctggctgatctgtgtaacatgctggcacgtgtggaccatgaggaagtg
ccgttgtacaaagtcgacactgacgaaagcgagggagatgaggagttgactgtgctgcaa
ttgaaggaggacaggctgcttgctggctttgtaccactgctggctgcaccacaggagccc
tgctacacagacagacacactgacatggcaatagcagcagattgtaagagagtgacggtg
ctgaagtactttctggaggctttgtgtggacaggaagagcctctgttggccttcaaggga
ggcaaatacatctctgtggcaacttctcctccagctagccactcaatggacacaaggagc
aggcaggattctctaacagagaaagaggctgatgatgtcatagtcgaggcagagtcctct
ccctcagcatcagaaggggaggaggatgccgaggatgcgggagacagtgagaatgacatc
aggcagctgaaggcgcgacgccacgccctcaccaacaaactggcacagcaacagaagcgt
agggataaaatacaggcggtgctgcagacaggcgggcagttggagctggaagtgaggcct
ctctttttggttccagataccaatggattcattgatcacttgggagggctgaagaaactc
cttcagtgtggaacatacataatagttgtgccactcatcgtgattacagagttagatggc
ttggctaaaggccaggacaactttggtggaggagtggggtcaggagggcgcggcactggc
agtcgtggcaactataatgttactgcagcccatgtgcggtctgtgcaggagaaggcccgg
ttggcagtggctttcctagagaaaggattcgaagccagggaaccgtacctgagagcgctg
acaagcagaggaaatcagcttgagtctattgccttccgcagtgaagacacctctggacag
cagggtaacaatgatgatgtgattctgtcctgctgtctcaactactgcaaagacaaggca
aaagatttcatgcctgatcagagaaatgggacagtgagactccaaagggaggtggtgctc
cttacagatgaccgtaacctgcacgtcaaagctttgacccgcaacgtaccggtccgagac
atccctgctttcttaagctgggccaaagtgggctga
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integrated database retrieval system
