Siniperca chuatsi (mandarin fish): 122888658
Help
Entry
122888658 CDS
T08948
Symbol
trpc6a
Name
(RefSeq) short transient receptor potential channel 6a isoform X1
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
122888658 (trpc6a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
schu04040
]
122888658 (trpc6a)
Ion channels [BR:
schu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
122888658 (trpc6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank_4
Ank
YVC1_C
DUF6744
Motif
Other DBs
NCBI-GeneID:
122888658
NCBI-ProteinID:
XP_044079290
LinkDB
All DBs
Position
LG14:complement(13142356..13155848)
Genome browser
AA seq
880 aa
AA seq
DB search
MNHRPPAVHYNSQPAGSTDSPRARSRDNLLMYDDFGEENCCPGRCLGHSNSEKQLMARLS
AVKRRQAVRGPAYMFSAPSISLSEVEQRFLEAAEYGNIPEVRRMLLHVPELNVNAVDYMG
QNALQLAVANEHLEVTELLLGRADLARVGDALLLAISKGYVRITEALLCHQAFRDAHRLT
ASPAQADMLDDFYAYDEDGMRFSHDVTPVILAAHCQEYEIVHTLLSKGARIDPPHDYFCG
CDSCNYQQQYDSFSHSRSRINAYRGLASPAYLSLSNEDPVLAALELSNELAMLANIEKEF
KNEYCCLSSQCKDYVVGLLDLCRSTEEVEAILSGETDSEDSYDLPGRPSLTRLKLAIKYE
LKKFVAHPNCQQQLLSIWYENLPGLRQQTTAMKLLVVLAVAIGLPGLALAYWFAPCSRVG
KVMRSPFMKFVAHASSFTIFLGLLILNAADRFAGTTLLPNMTHHQLPGGHQLDPLLLYRM
TTTPFTWMEILIISWIMGMIWAEVKEIWSQGPGEYLVEPWNFLDFGMLAIFLASFSCRFS
TLRHADLAQTYVHTHYTTLINVTLPPEIHYFTLARIYWLPSDPQLVSEGLYAVAVVLSFS
RIAYILPANESFGPLQISLGRTVKDIFKFMVIFILVFLAFMIGMFNLYSYYLGAKQNDAF
TTLEESFKTLFWAIFGLSEVRSVVINNGHKFIENIGYVLYGVYNVTMVIVLLNMLIAMIN
SSFQEIEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLVPSPKSMLGLATAIKSLLLQYV
AGHSEEKTETQLNQLGVGKNSGFGASTSPTRYQKIMKRLIKRYIIKAQADRESDEITEGE
LKEIKQDISSLRYELLEEKSQNMETLDGLLRRLGEISTPS
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacagaccgccggcggttcattataacagccaacctgcgggttccactgacagc
cccagggctcggagccgtgataacctgctgatgtacgatgattttggagaggagaactgt
tgccctggacgatgtctcggccacagcaactctgagaaacagctcatggctcgtctcagt
gctgttaaacgacgccaggctgttcgtggtcctgcctacatgttctctgctccttcaatc
agcctgtcagaggttgagcagcgtttcctggaggcagctgagtacggcaacataccagag
gtgcggcgtatgctgctccatgtgccagagttgaatgtcaatgctgtggactacatgggc
cagaatgcattgcagctggctgtagccaacgaacatctggaggtgacggagctgctgttg
gggagggcggatttggccagagtgggtgatgccctcctgttagccatcagtaaaggttat
gttcgtatcacagaggccctgttgtgtcaccaggcgtttagagatgcccatcgtctgaca
gcgagccctgctcaagcagacatgttggatgacttctacgcttatgatgaggacgggatg
aggttctctcatgatgttactccagtgatccttgcagcgcactgccaggaatatgagata
gttcacaccctgttgagtaaaggggctcgtatcgatcctcctcatgattacttctgcggc
tgcgattcctgtaactaccagcagcagtatgactccttcagccactcgcgatcaaggatc
aatgcctacagaggactcgccagtcctgcttacctctccctgtccaatgaggacccggtg
ctggcagccctggagctcagcaacgaactggccatgctggctaatattgagaaagaattt
aagaacgagtactgctgtctttcgagccagtgtaaggactatgtggtgggccttctggat
ctgtgtcgcagcaccgaggaggtggaggccatactgagcggagaaactgactctgaagac
agctatgatctaccaggtcgcccctccctcacacggctcaaattagccatcaagtacgaa
ctcaaaaagttcgtggctcatcctaactgccagcagcagctgctgagtatctggtatgag
aatctgcccggcctgagacaacaaaccactgcaatgaaactgctggtggtgctggcggtg
gctataggacttcctggactggctctggcttactggttcgctccgtgcagcagagtgggg
aaagtcatgcgtagccccttcatgaagtttgtggcccatgcctcatccttcacaattttt
ctgggtcttctgatcctgaatgctgctgaccgttttgcaggcaccaccctgttgccaaac
atgacccaccatcagctcccaggaggacaccaactcgacccactgctgctctaccgcatg
accacaacacccttcacatggatggagatcctcattatttcatggatcatgggtatgatc
tgggctgaggtgaaggagatctggagtcaagggccgggggagtacctggtcgaaccgtgg
aactttctggactttgggatgctggcgatcttcctcgcctccttcagctgccgcttctcc
actctgagacacgctgacttagcccagacctatgtacacacacactacacaacactgatt
aatgtcacactgcctcccgagatacactactttacactggcacgtatctactggttgcca
tcagatccccagctggtgtcagagggcctgtacgcggtcgcggtggtgctgagcttctct
cggattgcttacatcctcccagccaatgagagcttcggtccactgcagatatctttaggg
aggaccgtgaaggacatcttcaagttcatggtcatcttcatcttggtctttctggcattc
atgatcggcatgttcaacctgtactcttattacctgggggcaaagcagaatgacgccttc
accaccctggaggagagcttcaagactttgttctgggctatatttggactgtctgaggtc
aggtctgtcgtaatcaataatggacacaaattcatcgagaacattggttacgtgttgtat
ggggtttacaacgttaccatggtgatagtgctgctcaacatgctcatcgctatgatcaac
agctccttccaggagattgaggatgatgctgatgttgagtggaagtttgctcgggccaaa
ctctggttctcctactttgaggagggaaggactctccctgtgcccttcaacctggttccc
agtccaaaatctatgctgggactggctacggccatcaagtccctgctcctgcagtacgtg
gcaggacacagtgaggagaaaactgagacacagctcaaccagctcggagtaggcaaaaat
tcaggatttggtgcgtctaccagcccaaccagatatcagaagatcatgaagcgactgata
aagcgttacatcatcaaagctcaagcagacagagagagtgacgagatcactgaaggtgag
ctgaaagagatcaagcaggacatctccagtctgcgatatgagctgctagaggagaaatca
cagaacatggagacactggatggactgctgaggaggctgggagagatcagtacaccgtct
tag
DBGET
integrated database retrieval system
