Sphingomonas changnyeongensis: GVO57_04755
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Entry
GVO57_04755 CDS
T07798
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
schy
Sphingomonas changnyeongensis
Pathway
schy03030
DNA replication
schy03410
Base excision repair
schy03420
Nucleotide excision repair
schy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
schy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GVO57_04755 (ligA)
03410 Base excision repair
GVO57_04755 (ligA)
03420 Nucleotide excision repair
GVO57_04755 (ligA)
03430 Mismatch repair
GVO57_04755 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
schy03032
]
GVO57_04755 (ligA)
03400 DNA repair and recombination proteins [BR:
schy03400
]
GVO57_04755 (ligA)
Enzymes [BR:
schy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GVO57_04755 (ligA)
DNA replication proteins [BR:
schy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GVO57_04755 (ligA)
DNA repair and recombination proteins [BR:
schy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GVO57_04755 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GVO57_04755 (ligA)
MMR (mismatch excision repair)
DNA ligase
GVO57_04755 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GVO57_04755 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QHL90273
UniProt:
A0A7Z2NUX4
LinkDB
All DBs
Position
930768..932819
Genome browser
AA seq
683 aa
AA seq
DB search
MTLMTEGDAARRLAELAALIAHHNRLYHAEDAPEIADADYDALVRENAALEAAWPQLVRA
DSPSRQVGAAPAAHLAKVPHARAMLSLDNAFADADVLEFVIRVRRFLNLGEDERVALTAE
PKIDGLSCSLRYEDGRLVLAATRGDGMVGEDVTANVRTIADIPARLNGDAPRVFEVRGEV
YMAKADFAALNERLAGERVFANPRNAAAGSLRQKDPSVTATRSLRFLAHGWGEASDLPGA
TQYEVMQAIAGWGLPVSELLLRAEQVEGALAHYRRIEALRADLPFDIDGVVYKVDRLDWQ
ARLGQVAKAPRWAVAHKFPAERAQTTLIAIDIQVGRTGKLTPVARLEPVTVGGVVVTNAT
LHNADEIARLGVRPGDRVTLQRAGDVIPQILENLTPEIQRPDFVFPATCPECGSDAVREE
GEVDIRCTGGLICPAQRVERLRHFVSRGAMDIDGMGGVTIESFFRDGLLHAPADIFRLRA
RRAELVGRERWAETSVDNLLAAIEARRTPEAARFLFGIGIRHVGSVTARDLMRAFGTVEA
LADVATRAGTDPAAFAELTAVEGVGPVVAQALADFFAEPHNRAAWDDLLREIAPQPFAAN
ERDSEVTGKTVVFTGSLETMSRDEAKAQALALGARVAGSVSAKTDLVVAGPGAGSKLKKA
EELGIRVIDEAGWAAIVAAAGSG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaccctgatgaccgagggcgatgccgcgcgccggctggctgagctggccgcgctgatc
gcgcatcacaatcgcctgtatcacgccgaggacgcgcccgagattgcggacgccgattat
gacgcgctggtgcgcgaaaatgcggcgctggaggcggcctggccgcagctggtgcgcgcc
gattcgccgtcgcgccaggtcggcgccgcgcccgccgcgcatctggccaaggtgccgcat
gcgcgggcgatgctcagcctcgacaatgcctttgccgatgccgatgtgctggagttcgtg
atccgggtcaggcggttcctcaatctgggcgaggacgagcgggttgcgctgaccgccgag
cccaagattgacggcctgtcctgttcgctgcgctatgaggacggccggctggtgctggcg
gcgacgcgcggcgacggcatggtcggcgaggatgtgaccgccaatgtccgcaccatcgcc
gacatccccgcgcggctgaacggcgatgcgccgcgcgtcttcgaggtgcgcggcgaggtt
tacatggccaaggccgatttcgccgcgctcaacgaacggctggcgggcgagcgggtgttc
gccaatccgcgcaacgccgctgccgggtcgctgcggcaaaaggatccgtcggtcaccgcc
acgcgctcgctgcgttttctggcccatggctggggcgaggcgtcggacctgcccggtgcc
acccaatatgaggtgatgcaggcgattgccggctgggggctgccggtgtcggagctgctg
ctgcgcgccgagcaggtggaaggcgcgcttgcccattaccggcggatcgaggcgctgcgc
gccgacctgccgttcgatatcgacggtgtggtctacaaggtcgaccggctcgactggcag
gcgcggctgggccaggtggccaaggccccgcgctgggcggtcgcgcacaaatttcccgcc
gagcgcgcgcagacgacgctgatcgcgatcgacatccaggtcgggcgcaccggcaagctg
acgccggttgcgcggctggagccggtgacggtgggcggcgtcgtcgtcaccaacgccacg
ctgcacaatgccgacgagatcgcccggctgggcgtgcgccccggcgaccgggtgacgctg
cagcgcgccggcgacgtcattcctcagatcctcgaaaatctgacgcccgagatccagcgg
ccggatttcgtctttcccgccacctgccccgaatgcggatcggacgcggtgcgcgaggag
ggcgaggtcgacatacgctgcaccggcgggctgatctgcccggcccagcgggtcgagcgt
ctgcgccatttcgtcagccggggggcgatggacattgacggcatgggcggggtgacgatc
gaaagctttttccgcgacggcctgctccatgcccccgccgacatcttccggctgcgcgcc
cggcgggccgagcttgtcggccgcgaacgctgggcggaaacctcggtcgacaatctgctc
gccgcgatcgaggcgcgccggacgcccgaggccgcgcgtttcctgttcggcatcggcatc
cgccatgtcgggtcggtcaccgcgcgcgatctgatgcgcgcctttggcacggtcgaggcg
ctggccgatgtcgccacccgcgcgggcaccgacccggcggcctttgccgaactgaccgcc
gtcgagggcgtcggcccggtcgtcgcccaggctctcgccgatttcttcgccgaaccgcac
aatcgcgccgcctgggacgatctgctgcgcgaaatcgccccccagccctttgcggccaat
gagcgcgactccgaagtcaccggcaagaccgtggtgttcaccggaagcctggagaccatg
tcgcgcgacgaggccaaggcgcaggcgctggcactgggcgcgcgggtcgccggatcggta
tcggccaagaccgatctggtggtcgccgggccgggcgcgggctccaagctcaaaaaggcc
gaggaactgggcatccgcgtgatcgacgaggccggctgggcggcgatcgtcgccgcggcg
gggagtggttag
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