Streptomyces collinus: B446_25775
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Entry
B446_25775 CDS
T02787
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sci
Streptomyces collinus
Pathway
sci03030
DNA replication
sci03410
Base excision repair
sci03420
Nucleotide excision repair
sci03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B446_25775 (ligA)
03410 Base excision repair
B446_25775 (ligA)
03420 Nucleotide excision repair
B446_25775 (ligA)
03430 Mismatch repair
B446_25775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sci03032
]
B446_25775 (ligA)
03400 DNA repair and recombination proteins [BR:
sci03400
]
B446_25775 (ligA)
Enzymes [BR:
sci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B446_25775 (ligA)
DNA replication proteins [BR:
sci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B446_25775 (ligA)
DNA repair and recombination proteins [BR:
sci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B446_25775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B446_25775 (ligA)
MMR (mismatch excision repair)
DNA ligase
B446_25775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B446_25775 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HMBD
NHase_beta_N
Motif
Other DBs
NCBI-ProteinID:
AGS71963
UniProt:
S5UXJ5
LinkDB
All DBs
Position
5928506..5930701
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQARTTAVPAEAREKHTRLAEQVEEHRFRYYVKDAPVVSDAEFDKLLKTLEALEAE
YPELRTPDSPTQKVAGSYATEFTAVEHRQRMLSLDNTFNDDDLAAWADRIARELGEQEYH
FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDDVPDLVE
IRGEVYFPMEKFLELNARLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LEGFSGMTRLSQAYDLLKTWGLPTSPHNRVVDDLDGVRAFIAYYGENRHSVAHEIDGAVI
KLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPGECP
ECGTALRPMKEGDIDLRCPNARACPAQLRGRLSYLAGRECLDIEHFGDVAAAALTQPLEP
ADPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKVVTVFANQKGEPKKNT
LALLENIEAAKSRPLARFLNGLSIRHVGPVAAQALAREFRSLDRIEQATEVELAGTDGVG
PIIAAALKEWFAEEWHREIVRKWKAAGVPLEDQASGEDEGPRPLEGLTVVVTGTLENFTR
DGAKDALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFAVLLERGPE
AAAEVALPSAE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcccggacgacggcggtgcccgccgaggcccgcgagaagcac
acgcggctcgcggagcaggtcgaggagcaccgcttccggtactacgtgaaggacgctccc
gtcgtcagcgacgcggagttcgacaagctcctgaagacgctggaggcgctggaggcggag
taccccgagctgcgcaccccggactcgcccacccagaaggtcgccgggtcgtacgccacg
gagttcaccgccgtcgagcaccgccagcggatgctctccctggacaacaccttcaacgac
gacgacctggccgcctgggccgaccgcatcgcgcgggaactgggcgagcaggagtaccac
ttcctgtgcgagctgaaggtcgacggcctcgcggtcaacctcacctacgagcacggccgt
ctcacccgcgcggccacccgcggcgacggccgcaccggcgaggacatcaccccgaacgtc
cgcacgatcgcggagatcccggaccgcctcaagggcgacgacgtcccggacctggtcgag
atccgcggcgaggtctacttcccgatggagaagttcctcgagctgaacgcacgcctggtc
gcagcgggagacaagcccttcgccaacccccgcaacgcggcggccggttcgctgcggcag
aaggacccgcgggtcaccgccacccggccgctgcacatggtcgtccacggcatcggcgcc
ctggagggcttctcgggcatgacccgcctctcccaggcctacgacctgctgaagacctgg
ggactgccgacctccccgcacaaccgcgtggtcgacgacctcgacggcgtccgcgcgttc
atcgcctactacggcgagaaccgccactccgtggcgcacgagatcgacggcgccgtcatc
aagctcgacgagatccgcctccagggccgcctgggctccaccgcgcgcgccccgcgctgg
gcgatcgcctacaagtacgcgccggaggaggtcaacaccaagctcatcgacatcaaggtg
ggggtcggccgcaccggccgggtcacgccgtacgcccaggtcgagccggtcaccgtcgcg
ggcagcgaggtcgagttcgccaccctgcacaaccaggaggtcgtcaaggccaagggcgtg
ctcatcggcgacaccgtcgtgctgcgcaaggccggtgacgtcatcccggagatcctcggc
cccgtggccgacctgcgggacggcagcgagcgggagttcgtgatgccgggcgagtgcccc
gagtgcggcacggcgctgcggcccatgaaggagggcgacatcgacctccgctgccccaac
gcccgtgcctgccctgcccagttgcgcggacgcctgtcctacctcgcgggccgcgagtgc
ctggacatcgagcacttcggcgacgtggccgcggccgcgctcacccagccgctggagccg
gccgacccgccgctggtcgacgagggcgacctgttcgacctgacggtggagaagctgctg
cccatcaaggcctacgtcctcgacccggacagcgggctgcccaagcgggacccgaagacg
ggcgaggagaaggtcgtcacggtcttcgccaaccagaagggcgagccgaagaagaacacc
ctcgccctcctggagaacatcgaggcggccaagtcccgcccgctcgcccgcttcctgaac
gggctgtccatccggcacgtcggcccggtcgccgcgcaggccctcgcccgcgagttccgc
tcgctcgaccgcatcgagcaggccaccgaggtggagctggccggcacggacggcgtcggc
cccatcatcgccgccgccctcaaggagtggttcgccgaggagtggcaccgcgagatcgtc
cgcaagtggaaggcggccggagtcccgctggaggaccaggcctcgggcgaggacgagggg
ccgcgtccgctggaggggctcaccgtcgtcgtcaccggcaccctggagaacttcacgcgg
gacggcgccaaggacgcgctgcagagccgcggcgcgaaggtgaccggatcggtgtcgaag
aagacctcgttcgtggtggtcggcgacaacccggggtcgaagtacgacaaggcgatgcag
ctcaaggtcccggtcctgaacgaggacggtttcgccgtcctgttggagcggggacccgag
gccgcggccgaagtcgcgcttccctccgccgagtag
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