Salicibibacter cibarius: HUG15_00665
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Entry
HUG15_00665 CDS
T07370
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scia
Salicibibacter cibarius
Pathway
scia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HUG15_00665 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scia03400
]
HUG15_00665 (mfd)
Enzymes [BR:
scia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUG15_00665 (mfd)
DNA repair and recombination proteins [BR:
scia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HUG15_00665 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
KGK
Motif
Other DBs
NCBI-ProteinID:
QQK74276
UniProt:
A0A7T6Z0Q8
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All DBs
Position
132077..135625
Genome browser
AA seq
1182 aa
AA seq
DB search
MKAITQKLMENKHIQSIEEGLENGLHEQLLTGLSGSAKTILSSALYHLGRKPQVLVTYNL
LQAQKWQEDLSDLLGEENVYLYPVNELISAEIAVASPEMRAQRMEVMNALFADFQGVVIV
PMAGLKRLLPPKAVWGKSQLSLHEQDDLDVDDLLKRFASMGYSRVDMVSAPGEFSVRGGI
IDVYPLTEQHPLRIDLFDTEIESIRYFNAEDQRSLEKIRHVQIGPADEVVLFDEHWQRAN
EKLDANLDETIKQVKDAETKDLLQQKLSQERDLLNEQIRFQGLYKYMTYFYTEANTLVDY
LPENALVMIDEISRVQETAEQLDQEEANWQMALLEQGDAPRGIRVSESFQDVLQAIQQQI
VYFSLFLRSVPATQPQNIVNVNCKAMQQFHGQMPVLQGEMERWMRGDFTVVFVAADEERG
RRLQHILSDYKIDAEWVSRDTELQSRRAYIMEGDLHNGFELPFDQLAIVTERETFTKKVT
RKRKQQKLSNAERIKSYSELHVGDLVVHVDHGIGKYLGVETLAVNGLNQDYIHISYAGND
KLYVPVEQIDQVQKYVGSEDKDPKIYKLGGQSWKKVKRKVQSSVEDIADDLVKLYAEREA
SQGYAFSGDQQEQRDFEASFPYQETEDQLKAINEIKEDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIMDGKQVALLVPTTILAQQHFDTISERFSDYPINIGLLNRFRTRKQQTETLR
SLKTGGLDLVIGTHRLLSKDVQFKDLGLLIVDEEQRFGVTHKEKIKQLRANIDVLTLTAT
PIPRTLHMSMLGVRDLSLIETPPENRFPVQTYVLEYNPSLVKEAIERELGRGGQVFFLHN
RVDNIERMTEQISMLVPEAEVSYAHGQMQEQELEAVMIDFLEGHKDVLVTTTIIESGVDI
PNVNTLIINHADRMGLSQLYQIRGRVGRSNRVAYAYFSYQRDKVLTEVAEQRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGYIDSVGFDMYSQMLKEAIDNRKGVQEKVETKH
SDIELDVKVEAYIPEDYIKDAKQKIEMYKRFRGVETFDDLSDLHDEMIDRFGEYPDEVRA
LFSISRIKLFAQQEGVEAISESSGKCTIMLSEETSNVIDGALLFKFVNELGRDVVVGTEG
KKIKLIIHAKRLSSAVYVSLLERILARIPEVRKDYMSESVSS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcgattacacagaagttaatggaaaataagcatattcaaagcatagaggaaggt
ttggaaaacggattacacgaacaactgttgacgggattgagcggttcggcgaaaacgatc
ctatcatctgcgctttatcatttggggcgaaagccgcaagtgcttgtcacctataattta
ttgcaagcgcaaaaatggcaagaggacttaagtgatttacttggagaggaaaatgtctat
ttataccccgtgaacgaattgatatccgcggaaattgcggttgccagtccggagatgaga
gcacaacgcatggaggtcatgaatgcgctttttgctgattttcaaggggtggttatcgtg
ccaatggcggggctcaagcgattgttgccgccaaaagcggtttggggaaagagccaacta
tcccttcatgagcaagatgatctggacgtggatgatttgttaaaacgctttgcttcaatg
gggtattcacgtgttgacatggtttccgctccgggggaatttagtgtgcgcggcggaatc
atcgatgtttatccgctaaccgaacaacatccactccgtattgacttgtttgataccgaa
attgaatccattcgttactttaatgcggaagatcaacgttcgttggaaaaaattcgtcat
gttcagatcggcccggcagatgaggttgttttgtttgatgaacactggcaacgcgcgaac
gagaaactggacgcaaatttggacgagaccattaaacaggtaaaagacgcggaaacaaag
gacctcttgcagcaaaaattgtcgcaggagcgtgatctgttaaacgaacagattcgcttt
caaggcttatacaaatacatgacgtatttttatacggaagcaaacacgcttgtggactat
ttgcctgagaatgcgcttgtaatgatcgatgaaattagccgtgttcaagaaacagcagaa
caattggatcaagaagaagcaaattggcaaatggcattattggaacaaggggatgccccg
cgcgggatacgtgtgtctgaatctttccaagatgtgctgcaggcgattcaacaacaaatc
gtctatttctcattgtttttgcgaagtgttccggcgacgcaaccgcaaaacatcgttaat
gttaattgtaaagccatgcaacaatttcacggacagatgccagtgttgcagggagagatg
gaacgatggatgcggggggattttacggttgttttcgttgcagccgatgaagagcgtggc
cgtcgtttgcaacatatcttaagcgattataagattgatgcggaatgggtgtcgcgtgac
acggaattgcaaagcaggcgtgcgtatatcatggaaggggatttacacaacggttttgaa
cttcccttcgatcaacttgccatcgtaacggaacgggagacgtttacaaagaaagtcacc
cgtaagcgaaaacaacaaaaattatcgaatgcagaacggattaagagttattccgagcta
cacgtcggagatcttgttgttcatgttgatcatggaattggcaagtacttaggtgtggaa
acactggctgtcaatggattgaatcaggattatatccatatttcttacgcaggcaatgac
aaattatacgttccggtcgaacagattgatcaagtgcaaaaatatgtcggttccgaagat
aaagatccgaaaatttataaacttggagggcaaagttggaaaaaagtcaagcggaaggta
cagtcgtccgttgaggatattgctgacgatctcgtcaagctgtatgccgagcgcgaggct
tcacaagggtatgctttttcaggggatcagcaggagcaacgagattttgaagcatctttt
ccttaccaggaaacagaggatcagttaaaagccattaacgaaataaaagaagacatggag
cgggagcgtccgatggatcgcctgctatgcggggatgtcggttatgggaaaacggaagtg
gccatccgcgcggctttcaaagcgatcatggatgggaaacaagtggcgttgctcgtcccg
acgacgattcttgcccaacagcattttgacacaatttccgaacgtttttccgattatccc
atcaacatcgggcttcttaaccgttttcgcacgcgcaagcaacaaacggaaactctccgg
tctttaaaaaccggcggactcgatttggtgatcgggacccatcggctgctgtccaaagac
gttcaatttaaagatctcggcttgctgatcgtcgatgaagaacaacgttttggcgtgaca
cacaaagaaaaaatcaagcaattgcgcgccaatattgatgtgcttacactaaccgcgaca
ccgattccgcgaacccttcatatgtccatgctcggggtacgtgatttatcgcttatcgaa
acgcctccggaaaatcgttttcctgtgcaaacgtatgtgttggaatataacccgtcgctc
gtcaaggaagcgattgaacgtgaattaggccgcggagggcaagtgttctttttgcacaat
cgtgtagataatattgagcgaatgaccgagcagatttccatgctcgttcccgaggccgaa
gtgtcctatgcccatggccaaatgcaggagcaagaattggaagcagtcatgatcgatttt
ctcgaagggcataaagatgtattggtaacgacaacgattattgaatccggtgtggacatc
ccgaatgttaacaccttaattatcaatcatgcggatcgtatggggctttcccagctgtat
caaatccgtggccgtgtcggtcgctcgaatcgagtcgcttatgcctatttttcgtatcag
cgggataaagtgcttacggaagttgcggagcaacgcttgcaagcgattaaagaatttacg
gagcttgggtctgggtttaaaatcgctatgcgggacttatcgatccggggagccggaaac
ttgttgggagctgagcaacatggttatatcgactccgtcggttttgacatgtattcgcaa
atgctgaaagaagcgattgataaccgcaaaggggtacaggaaaaagtggaaacgaaacat
tccgatattgaactggatgtgaaagtggaagcttatattccggaagattatattaaagac
gccaaacaaaaaattgaaatgtacaaacgttttcgcggcgtagagacgtttgatgactta
agcgatttacacgatgaaatgattgaccgtttcggtgaatatccggatgaagttcgtgcc
ctgttctcgatttcgaggattaagctatttgcccaacaggaaggggtagaggcgatatcg
gaaagtagcggcaaatgcacaatcatgctctcggaggaaacctcaaatgtcatcgacgga
gccttgctctttaaattcgtcaatgaattgggcagagatgtcgttgtcgggaccgaagga
aagaaaattaagctgatcatccatgccaaacgtttatcctcggcggtttacgtctctttg
ctcgaacgaattctcgcccggattccggaagtaaggaaagactatatgtcagagtcggtt
tcttcgtga
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