Salicibibacter cibarius: HUG15_07645
Help
Entry
HUG15_07645 CDS
T07370
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scia
Salicibibacter cibarius
Pathway
scia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUG15_07645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scia03019
]
HUG15_07645
03009 Ribosome biogenesis [BR:
scia03009
]
HUG15_07645
Enzymes [BR:
scia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUG15_07645
Messenger RNA biogenesis [BR:
scia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUG15_07645
Ribosome biogenesis [BR:
scia03009
]
Prokaryotic type
rRNA helicases
HUG15_07645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF5612
Motif
Other DBs
NCBI-ProteinID:
QQK75465
UniProt:
A0A7T6Z1W4
LinkDB
All DBs
Position
1460210..1461649
Genome browser
AA seq
479 aa
AA seq
DB search
MRFEELDLPPYLLKSIQQMGFTEATSIQEKVLPVARDGSDVIGQAQTGTGKTAAFALPII
EKVDPEDPNVQALILTPTRELAVQVCEEVNSLGRTKKVKAVAVYGGADMGRQIRELKARP
SIIVATPGRYMDHTRRRTIRPQSIRTVVLDEADEMLSMGFIEDIEEILEKIPEERQTLLF
SATMPARLKKVADRFMTEPQTVSVKAKAMTVSNIEQFALKVPEKQKLSALGRLFDFEDPD
LAIIFGRTKRRVDELSEALEQQGYEAAGIHGDMKQAQRTNVLRRFKQGAVKYLVATDVAA
RGIDVTGVTHVFNFDIPQESDSYVHRIGRTGRAGHSGKAYTFVAPVEMDHMAMIEKATKG
NVKHIDVPSDHEAEVARQERAARELTQIMEKQEHTGLEPMAEKLLQEHEPVTVVAAALSM
LQKDTKEPTKKLTGERPLVSKQKRKPAGKQGRFQQRRGGGGRQKNHDRNRRNNQRRRSG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgaagaattggatttaccgccttatttattaaaaagtatacaacagatgggt
ttcacggaggccacatcgattcaggaaaaagtattgcccgtcgctcgtgatggcagtgat
gtcatcgggcaggcacaaaccggaacgggaaaaaccgctgctttcgcgcttcccatcatc
gaaaaagttgacccggaggacccaaacgtacaagcgctcatcctcacccctactcgtgag
ttggccgttcaagtgtgcgaagaagtgaacagtcttgggcgcactaaaaaagtgaaagct
gttgctgtgtacgggggtgccgatatggggcggcaaataagggaattaaaagcccgcccg
tccatcattgtcgctacaccggggcgttatatggaccatacacgaagaaggacgattcgc
ccgcagtcgatccgtaccgttgtgcttgatgaagcggatgaaatgctgagcatgggcttc
attgaagatattgaagagatattggaaaaaattccggaggaacggcaaacacttttgttc
tctgcaacgatgccggcccgtttgaaaaaagttgccgatcgttttatgacggaaccgcaa
accgtttccgttaaagcgaaagcaatgacggtgtccaatattgaacaatttgcgctcaaa
gtacccgaaaagcagaaactatccgcgcttggccgtctgtttgattttgaagatccggat
cttgcgataattttcggtcgcacgaaacggagagtggatgagttatccgaagcgctcgag
caacaagggtatgaagcggccggcattcatggagatatgaaacaagcgcagcggaccaat
gtgttacgccgtttcaagcaaggggccgtcaagtatttggtggctacggatgtggcggcg
cgggggattgacgttacgggcgttacccacgtgtttaacttcgatattccgcaagagtcg
gatagttatgttcaccggatcggccggaccggacgcgcagggcattccggcaaagcctat
acattcgtcgctcccgttgaaatggaccatatggcgatgattgaaaaggcaaccaaagga
aacgttaaacacatcgacgttccgagcgaccatgaagcggaagtggcccgacaagaacga
gcggctcgagaacttacgcaaatcatggaaaaacaggaacataccggtcttgaaccgatg
gcggaaaaattgttacaggagcatgagccggtcacagtagtggctgccgcgctttccatg
ctgcaaaaagatacaaaagaaccgaccaaaaagctcaccggcgaacgcccgctcgtgagc
aaacaaaaacgaaaaccggcaggaaaacaaggccgatttcaacaacgccgcggtggcggg
ggacgtcaaaaaaaccatgatcgcaacaggagaaacaatcagcggcggcgttccggttaa
DBGET
integrated database retrieval system
