Salicibibacter cibarius: HUG15_12630
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Entry
HUG15_12630 CDS
T07370
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scia
Salicibibacter cibarius
Pathway
scia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUG15_12630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scia03019
]
HUG15_12630
03009 Ribosome biogenesis [BR:
scia03009
]
HUG15_12630
Enzymes [BR:
scia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUG15_12630
Messenger RNA biogenesis [BR:
scia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUG15_12630
Ribosome biogenesis [BR:
scia03009
]
Prokaryotic type
rRNA helicases
HUG15_12630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
AAA_30
Flavi_DEAD
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QQK76315
UniProt:
A0A7T6Z3Q8
LinkDB
All DBs
Position
complement(2442378..2443991)
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AA seq
537 aa
AA seq
DB search
MNVFESEHIKPEVKKAIKEIGFEEPSPIQEQAIPKALNDKDVIGQAQTGTGKTAAFGIPL
LTKLNASSHVQALVLTPTRELAIQVAGELQKLSTHLHVTTLPVYGGQSIGHQIKALKRGV
QVVIGTPGRVQDHLRRKTLKLDRVKTLVLDEADEMLDMGFIDDIESILKQTNEDRQTMLF
SATMPDPIRKLSRRYMKQPETVSISKSDVTAPSIEQIYFKVLERNKLESLCRVIDRYNPE
LAIVFCRTKKGVAELSESLQARGYFADGLHGDLNQSQRDAVMKRFRESTIEYLVATDVAA
RGLDVQNVTHVINYDIPQDPESYVHRIGRTGRAGKSGQALTLVTPREMKHLRSIEKEIKM
SLPTRDIPTLEEVVEKQQDSWRQQITGVIEHSEETSIFDELTRELLEQYQPQEVIDALLK
MNYQTENNISEEGYYFGDTGAAKGMVRFFMNVGRNVSLTPKILVDEIADAVGISKQSIGR
IDLFEKFTFVEVPEDVAPFVYEGLRHSRVHGARVNLEPAKPKPKRQGRQTSNPSVSN
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtatttgaaagtgaacatattaaaccggaagtaaaaaaagcaattaaggagatt
ggctttgaggagccctctccgatccaggaacaagcgataccgaaagcactaaacgacaaa
gatgtgattggacaagcgcaaaccggtaccgggaagacggcagccttcgggattcctctg
cttacaaaactaaacgcctcctcccacgtccaggcgctcgttttaacgccaacccgggag
cttgccattcaagtggccggggaattgcaaaagctgtccacccatctgcatgtcacaacg
ttgccggtctatggcgggcaatcgatcggtcatcaaatcaaggcgcttaaacgcggggtc
caagtcgttatcggaacccccgggcgcgttcaagaccatttgcggagaaaaacgttaaag
cttgaccgtgtgaaaacgctcgtcttggatgaagcggatgaaatgcttgatatgggtttc
atcgatgatattgaatcgattttgaaacaaacgaatgaggaccggcagacgatgcttttt
tcagcaacgatgcctgacccgatccgaaagctttcccgtcgctatatgaagcaacctgag
acggtgtccattagcaaaagcgatgttacggctccctcgatcgaacagatttattttaaa
gtgcttgaaaggaacaaactcgagtcgctttgccgtgtgattgatcgttacaacccggag
cttgcaatcgttttctgtcgcacgaaaaaaggcgttgcggaattatcggagtccttgcag
gcacggggttattttgcagacgggcttcacggtgatttgaaccaatcccagcgggatgcg
gtcatgaaaaggtttcgggaaagcacgattgagtatctcgtcgcgacagatgttgctgcc
cgcggactggatgtccaaaacgtcacccacgtgatcaactatgatatcccgcaagacccg
gaatcctatgtccatcgcatcgggcggaccggacgagccggcaagagcggccaggccctg
acgctcgtcactccgagggaaatgaagcatttacgctcgattgaaaaagaaataaagatg
tccttgccgacacgggatatcccgacgctggaagaagtcgtggagaaacagcaagactcg
tggcgacagcaaatcaccggtgtcattgaacatagcgaagagacatcgatctttgatgaa
ttaacccgggaactgctcgagcagtatcaaccgcaggaagtcatcgatgcgttgttgaaa
atgaattatcaaacggaaaataatatttctgaagaagggtattattttggtgataccggt
gcggcaaaaggcatggtccgtttctttatgaacgtgggccgcaatgtgagcttaaccccg
aaaatactcgtggatgaaattgccgatgcagtcgggatttcaaaacagtcgatcggacgc
atcgaccttttcgaaaaatttacgttcgtggaagttccggaagacgtggctccctttgtt
tatgaaggattgcgccactcccgtgttcacggtgcgcgcgtgaatttggagccggcaaaa
ccaaagccgaaacgccaagggcggcaaacatcgaatccttccgtttctaactaa
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