Salicibibacter cibi: HUG20_00760
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Entry
HUG20_00760 CDS
T07369
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
scib
Salicibibacter cibi
Pathway
scib03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scib00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HUG20_00760 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scib03021
]
HUG20_00760 (rpoB)
03400 DNA repair and recombination proteins [BR:
scib03400
]
HUG20_00760 (rpoB)
Enzymes [BR:
scib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HUG20_00760 (rpoB)
Transcription machinery [BR:
scib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HUG20_00760 (rpoB)
DNA repair and recombination proteins [BR:
scib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HUG20_00760 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QQK78584
UniProt:
A0A7T7CE19
LinkDB
All DBs
Position
153557..157099
Genome browser
AA seq
1180 aa
AA seq
DB search
MTGQLIQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEGMRVMFQDISPIEDFTG
NLVLEFIDYSLGEPKYSVEDSKERDVTYSAPLRVKVRLMNQETGEVKEQEVFMGDFPLMT
DTGTFIINGAERVIVSQLVRSPSVYYNQKFDKNGKRGFTATVIPNRGAWLEFETDAKDIT
YVRIDRTRKIPITVLLRALGFGSDQEIVDLIGENEYLRNALEKDNTDDTEKALLEIYERL
RPGEPPTVDNARSLLESRFFDPRRYDLANVGRYKINKKLHIKERLFNQVLAETLADPETG
EILAEEGTLIDRRVLDRLLPYLEDGLGFTSFRIAGGIVDEESEVTVQSIKVYAPNDPDGE
QTIEVISNGTLDSGIKNITPEDIVASISYFFNLLHGVGGTDDIDHLGNRRLRSVGELLQN
QFRIGLSRMERVVRERMSIQDPSQITPQGLINIRPVIASIKEFFGSSQLSQFMDQTNPLA
ELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVN
KFGFMETPYRRVDPETGVVSDRVDYLTADEELNYVVAQANASLNDDGMFVDDHIIARFRE
ENTIVSKDRIDYMDVSPKQVVSAATASIPFLENDDSNRALMGANMQRQAVPLLEPEAPVV
GTGMEYVSAKDSGAAITAAHRGIVKRVTAREIRMRRLEEVDGNEVETDEDVYRMSKFIRS
NQGTSYNQRPIVEGGDVIEKGEVLADGPSMDKGEMAIGRNVLLAFMTWEGYNYEDAIILS
ERLVKDDVFTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRVGAEIKD
GDILVGKVTPKGMTELTAEERLLHAIFGEKAREVRDTSLKAPHGGDGIVLDVKIFNREDG
DELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDMMLN
PLGVPSRMNIGQVLEMHLGMSARELGIHVATPVFDGAREEDVQESLEEAGIAGDGKTVLY
DGRSGEAYDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEM
EVWALEAYGAAYTLQEILTVKSDDTIGRVKTYESIVKGENVPEPGVPESFKVLIKELQSL
GMDVKMLSSNEEEIEMKELDDEEDQSSEKMNLKLESTENA
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaacttattcagtatggacgtcatcgccagcgaagaagctacgcaagaatt
agcgaggtacttgagctacccaatctcattgagattcaaacatcttcctatcagtggttt
ctcgatgaggggatgcgagtcatgtttcaggacatctcccctatagaagattttactggc
aatctcgtcttggaatttatcgactatagtcttggcgagccgaagtattccgtcgaagat
tctaaagagcgggatgtcacgtattctgctccattacgtgtgaaggtccgtctcatgaac
caggaaaccggtgaggtgaaggaacaggaagtatttatgggtgacttcccgctcatgacc
gataccggaacatttattataaacggggctgaacgcgtgatcgtttcccagcttgttcgt
tctcccagtgtttattacaatcaaaaattcgataaaaatgggaaaagaggttttactgct
accgtcatcccaaatcgcggagcctggcttgaatttgaaacggatgcgaaagatattacc
tacgtacggatcgatcgcacccgaaaaattcccataaccgtcttattaagggcacttggc
ttcgggtcagaccaagagatcgttgatttaataggagaaaatgagtatctgcgcaatgct
ttggaaaaagacaatacggatgacacggaaaaagcgctgttggaaatctatgagcgtctc
cgtcccggcgagccgccgacggtagacaatgcccgcagcttgcttgaatctcgctttttt
gatccgagacgatatgatttagcgaatgtagggcgctataaaatcaataagaaattgcat
attaaagagcgtctttttaatcaagttttggcagagacccttgcggatccggaaaccgga
gaaattcttgcggaagaaggaacgcttattgacaggcgtgtgcttgaccgtttgctgcct
tatctggaagatggtctcgggtttacctccttcaggattgccgggggcattgttgacgag
gagagcgaagtgaccgttcaatcgattaaagtttatgctcccaacgatccggatggcgag
cagacgattgaagtgattagcaacgggaccttggattccggaatcaaaaacattacacct
gaagacatcgtcgcttccatcagctattttttcaatttgcttcatggtgtcggcggcacg
gatgatattgatcacctcggaaatcgtcgtttgcgctcggtcggtgaattgttacaaaat
cagttccgcattggtctatctcgaatggagcgtgtcgtgcgtgaacgtatgtctattcaa
gacccgagccaaataacgccgcaagggctcattaacattcgtccggtcattgcttctatc
aaagagtttttcggaagctctcagctctcgcaatttatggatcaaacgaacccgcttgcc
gaattgacccataagcgtcgtttatctgcactcggtcccggaggtttaacgagagaacgg
gccggtatggaagttcgagacgttcactattctcactatggacgcatgtgtccgattgaa
acgcctgagggtccgaatatcggtttgatcaactccttgtcctcgtatgcaaaagtcaac
aaatttgggtttatggagacgccttatcgacgggtcgacccggaaacaggggttgtctcc
gatcgcgtggactatttgacggccgatgaagaattgaactacgttgtggctcaggcgaac
gcgagtctaaatgatgacggcatgttcgtcgatgaccatatcattgctcgtttccgcgaa
gaaaatacgatcgtgtcgaaagatcgcattgattatatggatgtttcccctaaacaagtt
gtgtcggctgcaacagcatccatcccatttctggaaaacgatgattccaaccgtgcgttg
atgggggcgaatatgcagcgtcaagccgttccgttgctcgagcctgaggcccctgtcgtt
ggaacagggatggaatatgtttccgcaaaggattccggtgcggccatcactgccgcccac
cgtgggattgttaaacgtgtgacagcaagggaaatccggatgcgtcgccttgaggaagta
gacggaaacgaagttgaaaccgatgaagatgtatatagaatgtccaagttcatccgttcc
aatcaaggcacgagctataatcaacgtccgattgtagaaggcggcgatgttatagaaaaa
ggagaagtgttggccgacggaccttcgatggataaaggggaaatggcgatcggccgaaat
gtgcttcttgcctttatgacttgggaaggatacaactatgaggatgccatcattctcagt
gagcggcttgtaaaagatgatgtattcacctccattcatatcgaagagtatgaatcggaa
gcgcgtgatacgaagctcggcccggaagagatcacccgcgatatcccgaacgtcggagag
gatgctttgcgaaaccttgatgatcggggcattatccgtgtcggtgccgaaattaaagac
ggagatatcctcgtcggcaaagtgacaccgaaagggatgaccgaactcacggccgaggaa
cgcttgcttcatgccatcttcggtgaaaaagcgcgtgaagtgcgcgatacttcgttaaaa
gcaccccacggcggggacggcattgtgctcgatgtcaagatttttaaccgtgaagatggc
gatgagcttccgccgggtgttaaccagcttgttcgtgtgtatatcgtgcaaaagcgaaag
attcacgaaggcgataaaatggctgggcgacacggaaacaaaggcgttatttctcggatt
ttaccagaggaagatatgcctttcatgccggacggcacaccggtagacatgatgttaaac
cctctaggggtgccttcgcgaatgaatatcggacaagtgctggaaatgcatttgggcatg
tctgcgcgcgaacttggcattcatgttgctacgccggtctttgatggtgcccgcgaagaa
gatgtccaagaatcgctcgaagaagcagggatagccggcgacggcaaaacggttttatat
gacgggcgcagtggtgaggcttatgataatcgtgtgtctgtcggtgtcatgtatatgatt
aagctggcgcatatggtggatgacaaacttcatgcccgttccactggtccctattcattg
gttacgcaacaaccgttgggcggtaaagcgcaatttggcggccagcgatttggcgagatg
gaagtttgggcacttgaggcctacggtgctgcatatacgttgcaagaaatcctaacggta
aagtctgacgatacgattggccgtgttaaaacgtatgagtctatcgttaaaggcgagaat
gtaccggaaccaggcgttccggaatcgttcaaagtgctgattaaagaactccagagcctt
ggcatggacgtaaaaatgctctccagtaatgaagaagagattgaaatgaaagagctggat
gatgaagaagaccagtcgagtgagaaaatgaacctgaaattggagtctacagagaacgct
taa
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