Salicibibacter cibi: HUG20_00765
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Entry
HUG20_00765 CDS
T07369
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
scib
Salicibibacter cibi
Pathway
scib03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scib00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HUG20_00765 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scib03021
]
HUG20_00765 (rpoC)
03400 DNA repair and recombination proteins [BR:
scib03400
]
HUG20_00765 (rpoC)
Enzymes [BR:
scib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HUG20_00765 (rpoC)
Transcription machinery [BR:
scib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HUG20_00765 (rpoC)
DNA repair and recombination proteins [BR:
scib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HUG20_00765 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QQK78585
UniProt:
A0A7T6Z7W6
LinkDB
All DBs
Position
157356..160973
Genome browser
AA seq
1205 aa
AA seq
DB search
MIDVNNFEYMKVGLASSDKIRNWSRGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVTETGDTPLEYKQLLSEKEYRSYYDKYGRSFTAQMGAEAIRKILS
DLNLEQEVKALRDELETAQGQRRTRAIKRLEVLEAFRHSGNHPAWMIMDVLPIIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPITGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVANGSAHNIKSAKRKVDRVQPEIWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARVLMMSAQNIL
NPKDGNPVVTPSQDMVLGNYYLTSERENAAGEGAVFKDSNEAVTAYQNGFVHLHTRVAVS
VSSMKSSRFPEKVKDQLLLTSIGKLIFNEILPSSFPYINEPSAGNLENETPEKYFVPKGT
DIKSTLAEMELVSSFKKGFLGDIIAEVFKKFQVTETSRMLDSMKDLGFYYSTKAGITVGI
SDVVVLPEKKKILDDAEEKVNRVMKQFRRGLITDDERYDKVISIWSEAKETIQERLMKTL
DTANPIYMMSDSGSRGNASNFTQLAGMRGLMANPSGQIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLSVETLREGTEIIEDLH
DRLVGRVAFQTVAHPDSGDTLVQKNDLITEDTAKAIVDAGIEKVTIRSVFACDTARGVCK
KCYGRNLATGSDVEVGEAVGIISAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQALITELEGTVSEIHDAGDKKDIIISGEIESKSYTTAYGARLRVAEGDRVEAG
QALTEGSIDPKELLKVTGIKEVKEYLLKEVQKVYRMQGVEIGDKHVEVMVRQMLRKIRVN
DSGDTDVLPGTLVEVNHFNDVNKDVLRNNQRPAVGTPVILGITKASLETDSFLSAASFQE
TTRVLTDAAIKGRSDALLGLKENVILGKLVPAGTGMQRYRSLKADNGEKSETETAEEPEG
ALSRR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtcaataattttgaatacatgaaagtaggccttgcttcttccgataagatt
cgtaattggtcgagaggagaagtgaaaaaacccgaaaccatcaactaccggacattgaaa
ccggagaaagatggcttgttttgtgagcgtattttcggtccgcaaaaggactgggaatgc
cattgcggaaaatataaacgggtccgttataaaggggttgtctgtgaccgatgcggggtt
gaagtaacacgggcgaaagttcgccgtgagcgtatgggtcatattgaactggcagctccg
gtatcacacatttggtattttaaaggtattccgagtcggatggggctggtgctcgatatg
tctcctcgctccctcgaagaagttatctatttcgcttcgtatgttgttacggaaaccggt
gatacaccgcttgaatataagcagttgctttccgaaaaagaataccgctcgtattatgat
aaatatgggcgttctttcactgcgcaaatgggcgcggaagcgattcgcaagattttatcc
gatttaaatctggagcaagaagtaaaagcgttgcgagatgaacttgaaacggcacaagga
caacgtcgcacacgtgccatcaaacgtttggaagtgctggaggctttccgtcattcaggc
aatcacccggcatggatgatcatggacgttctccctatcattccaccggaattacgcccg
atggttcagctggatggtggacggttcgccacttctgacttgaatgatttgtaccgtcgg
gtaattaaccgaaataatcgtttaaagcgtttattggatctcggtgcgccaagcatcatt
gttcaaaacgaaaaacgcatgctccaggaagctgttgacgcgcttattgataacggaagg
cgtggtcggccgatcaccggtccgggaaatcgcccgttaaaatcactttcccacatgctc
aaagggaaacagggaagattccggcaaaaccttctcgggaagcgggttgactactccggt
cgttcagttatcgtcgttggtccgagcttgaaaatgtatcagtgtgggttgccgaaagaa
atggcgttggaattgtttaagccatttgtcatgaaagagttggtggcaaatggatcggca
cataacatcaaaagtgctaaacggaaggtcgatcgtgtccaaccggaaatatgggatgtc
cttgaggatgtgatcaaagaacatccggtattgctaaaccgtgcaccaacgctacacagg
ttggggatccaggcgtttgagccggtactcgttgaaggtcgcgccatccgtctgcatccg
ctcgtttgtacggcttacaacgcggactttgacggagaccaaatggcggttcacgtgccg
ctatcggcagaagcgcaagcggaagcccgggttctgatgatgtctgcgcaaaacatccta
aatccaaaggacggaaacccggtcgttacaccttcacaggatatggtgctcggtaactat
taccttacctccgagcgtgaaaatgccgcgggtgagggtgctgtgttcaaagacagcaac
gaagcggttacggcgtaccaaaatggctttgtgcatctgcatacacgcgtggctgtttcg
gtttcttcgatgaaaagcagtaggttccctgaaaaagtgaaagatcaattgttgttgacg
tcgatcgggaaattgatattcaatgaaattttaccaagcagctttccgtatattaatgaa
ccctctgccggcaatttggaaaacgaaacaccggaaaaatactttgttccgaaaggaacg
gatataaaaagtacactagcggaaatggaacttgtttcctcatttaaaaaaggttttctc
ggcgatatcatcgctgaagtatttaagaaattccaggttacggaaacctcacgaatgttg
gatagcatgaaagatcttggtttctactactcaacaaaagccgggattacagttgggatt
tccgatgtggttgttcttcccgaaaagaaaaagatacttgatgacgccgaggagaaggtc
aatcgtgtgatgaagcagtttagacgcggtttgatcacagacgatgaaagatacgacaag
gtcatctccatttggagcgaagcaaaagagacgattcaagagcgtctgatgaaaacactg
gacacggcgaatccgatctatatgatgagtgactccggttctcgcgggaacgcttctaac
ttcacacagttagccggaatgcgtgggttgatggctaatccgtccggacaaatcatcgag
ctccctattaagtctagtttccgggaagggcttacggtattggagtattttatatccacc
catggtgcgcgtaaaggtctggcagacacagcgttgaaaaccgctgattccggttacttg
acccgccgcctcgttgatgttgctcaagatgtcattgttcgtgaagacgactgcggaaca
gatcgcggtctctcggttgagacattgcgagaagggacggagattatcgaagatctacac
gaccggcttgtggggcgcgtagcgtttcaaacggtcgcccaccctgacagcggagataca
cttgtgcaaaaaaatgacctgatcactgaagacaccgcgaaggcgattgtcgatgccggt
attgaaaaggtaacgatccgttctgtctttgcctgtgacactgcccgtggcgtttgcaaa
aaatgctatggtcgtaatttggcgaccggcagcgatgttgaggttggagaagcggttggt
attatctccgcgcagtctatcggtgagccggggacacagttaacgatgcgtacgttccac
accggcggggtggccggcgatgatattacccaaggtctcccgcgtattcaagaactcttt
gaggcccgtaatccgaaagggcaggcgcttattaccgaacttgagggtacggtaagtgag
attcacgatgcgggtgataagaaagacatcattatcagcggggaaattgaatcgaaatct
tatacaacagcatacggtgcacggttgcgtgtggctgaaggagatcgtgttgaagccggc
caagcgctcacggaaggttcgattgatccgaaagaattgctgaaagtgaccggcatcaag
gaagtaaaagaatacttgctcaaggaagttcagaaggtctatcgcatgcagggcgtggaa
attggcgataaacacgtagaagtcatggttcggcagatgctccgtaaaatccgcgtgaat
gactcgggggatacggatgtactgcctggcacattggtggaagtgaaccacttcaatgat
gttaacaaagatgtacttcgtaacaatcagcgcccggcagtcggtacgcctgttattctg
gggatcacaaaagcttccctagagacggactctttcttatcggcggcatccttccaggaa
acaacccgtgttcttacggatgcggcgatcaaagggaggtcagacgcgttgctcggctta
aaagaaaacgtgattctcggaaaactcgttccggcaggaacaggcatgcaacgctatcgt
tcgctcaaagcggacaacggcgaaaaaagtgaaacagaaaccgcggaagaacccgaaggt
gcgctttcacgtcggtaa
DBGET
integrated database retrieval system
