Salicibibacter cibi: HUG20_05200
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Entry
HUG20_05200 CDS
T07369
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
scib
Salicibibacter cibi
Brite
KEGG Orthology (KO) [BR:
scib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
scib03009
]
HUG20_05200 (rlmD)
Enzymes [BR:
scib01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HUG20_05200 (rlmD)
Ribosome biogenesis [BR:
scib03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HUG20_05200 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_15
PrmA
Methyltransf_11
Ubie_methyltran
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
QQK79345
UniProt:
A0A7T6Z9M7
LinkDB
All DBs
Position
1032575..1033969
Genome browser
AA seq
464 aa
AA seq
DB search
MTKKRTHLPVQKNERLEVTFQDLTHEGAGVAKVDGYPLFVPDALPGEKADVKVVKTGKNF
GFGRLMERHTTSTHRVDPPCPIYHWCGGCQLQHMDQEAQLSLKREQVINALHKYMGREDI
PVQETIGMNEPWAYRNKAQVPVAERDGELIAGFFAKRSHHIVDMDHCLIQGDQNDAAIQV
VKNILKRYEIEPYDEASGRGVIRHIVARNGRLSGETMVMLVTNGEELPHKKKLVEAIRSE
VSGIHSIVQNINKKKTNVVYGERTEILWGEKYIEERIGKLRFALSPRSFFQVNPVQTEVL
YEKVRQFAGLRGNETVIDAYCGIGSISLFLAEEARKVYGVEVIGEAISDARKNAKLNHFP
NVEFSVGKAEEVVPWWRAALGVEADVIVVDPPRKGCDEKLLQTMIEMKPERIIYVSCNPA
TLARDLGILSDGGYEVQEVQPVDMFPQTTHIECVTRLVRKIKER
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaaaacgaacgcacttgcccgtacaaaaaaatgagcggctcgaggtcacgttt
caagatctcactcatgaaggtgctggcgtggcgaaagtagatgggtatccgttattcgtc
cctgatgccctaccaggggaaaaggcagacgttaaagtcgtaaagacggggaaaaacttt
ggattcgggcgtctaatggagagacatacgacaagcacacaccgcgtcgacccgccctgc
ccgatttatcattggtgcggcggttgccagttgcaacacatggatcaggaagcgcaactg
tcattaaaacgtgaacaagtcataaatgcactccataaatatatgggcagagaagatatc
cccgtccaggaaacgatcggaatgaacgagccatgggcgtatcgcaataaagcgcaagtg
ccggtggctgagcgggacggggagctcatcgccggtttttttgccaaacgctcccatcac
attgtcgatatggatcactgcttgattcaaggcgatcaaaatgacgcggcgatacaagtc
gtgaaaaacatcctaaagcgttacgagatagaaccttatgatgaagcaagcggccgcggt
gtcattcgccatatcgtcgcccgtaacggacgtttgagcggagagacgatggtgatgctc
gttacgaatggtgaagaattaccccataagaagaaattggtcgaagccatacgcagtgaa
gtgtccggcattcattccatcgtgcaaaacataaataagaaaaaaacaaatgtggtctat
ggtgagcgtacggaaattctttggggagaaaaatatattgaagaacgcatcggcaaactg
cgttttgccctatctccccggtctttttttcaagtgaatccggtccaaacggaagtttta
tatgagaaagtacgccaattcgcaggattgcgcggaaatgaaacagtcatcgacgcctat
tgtggcattggctcaatttcgttgtttttagctgaagaagcaaggaaggtttatggagtc
gaagtcatcggggaagcgatcagtgacgcgcgtaaaaacgcaaaacttaaccacttccca
aatgttgaattttcggtcggaaaagcggaagaagtcgtgccttggtggcgggcagctctt
ggggttgaagccgatgtcatcgtcgtcgatcccccgcgtaaaggttgtgacgaaaaactc
ttgcagacgatgatcgaaatgaaacctgagcgcatcatttacgtttcctgcaacccggca
acgctagcccgtgatctcggcattctttcggatggcggttatgaagtgcaagaagtgcaa
cccgtcgatatgtttccgcagacgacacacatcgagtgtgtgacgcggttggtgcgtaaa
ataaaagaaagatag
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