Salicibibacter cibi: HUG20_05385
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Entry
HUG20_05385 CDS
T07369
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scib
Salicibibacter cibi
Pathway
scib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUG20_05385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scib03019
]
HUG20_05385
03009 Ribosome biogenesis [BR:
scib03009
]
HUG20_05385
Enzymes [BR:
scib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUG20_05385
Messenger RNA biogenesis [BR:
scib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUG20_05385
Ribosome biogenesis [BR:
scib03009
]
Prokaryotic type
rRNA helicases
HUG20_05385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CobA_CobO_BtuR
Motif
Other DBs
NCBI-ProteinID:
QQK79378
UniProt:
A0A7T6Z9F4
LinkDB
All DBs
Position
1072447..1073883
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AA seq
478 aa
AA seq
DB search
MTFEELDLPPYLLKSVQQMGFTEATSIQEKILPVARGGSDVIGQAQTGTGKTAAFALPII
EKVDPEDPNVQALILTPTRELAVQVCEEVNSLGRTKKVKAVAVYGGADMGRQIRELKARP
SIIVATPGRYMDHTRRRTIRPQSIRTVVLDEADEMLSMGFIEDIEEILEKIPEERQTLLF
SATMPNRLKKVADRFMTEPETVSVKTKAMTVSNIEQFALKVPEKQKLSALSRVLDFEDPD
LAIIFGRTKRRVDELSEALEQQGYEAAGIHGDMKQAQRTNVLRRFKQGAVKYLVATDVAA
RGIDVSGVTHVFNFDIPQESDSYVHRIGRTGRAGHSGKAFTFAAPVEMDHMAMIEKATKG
SIKHIDVPSDHEAEIARQERAAQELTQIIEKGEHTGLEPMAEKLLQEHEPVTVVAAALSM
LQKDKKEPAKKLTGERPIVSKQKRKPAGKQGRFQQRRGGGGRQKNQGRNRGNQRQRSG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaattggatttaccgccttatttattaaaaagtgtacaacagatgggt
ttcacagaggccacatcgattcaggaaaaaatattgcccgttgctcgtggtggcagtgat
gtcatcggtcaggcgcaaaccggaacgggaaaaaccgcggctttcgcgcttcctatcatc
gaaaaagtggatccggaggatccaaacgtacaagcgcttattctcacccctactcgtgaa
ttggccgttcaagtttgcgaagaagtgaacagtcttgggcgcaccaagaaagtgaaagct
gttgctgtgtacgggggtgccgatatggggcgacaaatacgggaattaaaagcccgcccg
tccattattgtcgcgacaccggggcgttatatggaccatacaagaagaaggacaattcgt
ccgcaatcgattcgtaccgttgtacttgacgaagcggatgaaatgctaagcatgggtttt
attgaagatattgaagagatattggaaaaaattcctgaagaacgacagacgcttttattc
tcggcaacgatgccgaatcgtttgaaaaaagttgccgatcgttttatgacagaaccggaa
accgtttccgtcaaaacaaaagcgatgacggtgtccaatattgaacaatttgcactcaaa
gtacccgaaaagcaaaaactgtctgcgcttagccgtgtgcttgattttgaagatccggat
cttgcgatcattttcggtcgcacgaagcggagggtggatgagctatctgaagcgctcgaa
cagcaagggtatgaagctgccggtattcacggggacatgaaacaggcacaacggaccaat
gtgttacgccgtttcaaacaaggagccgtaaagtatttggttgctacggatgtggcggcg
cgggggattgacgtttcgggcgtgacccacgtgtttaacttcgatattccgcaagagtcg
gatagctacgttcaccggatcggccgaaccggacgggcagggcattccggaaaagctttt
acattcgccgctcccgttgaaatggaccatatggcgatgattgaaaaggcaaccaaagga
agcattaagcacattgatgttccgagtgaccatgaagcggagatcgccagacaagaacga
gcggcacaggaacttacgcaaatcatcgaaaaaggggaacacaccggtctggagccaatg
gcggaaaaattgctacaggagcacgagccggtaaccgtagtggctgccgcgttgtccatg
ttgcaaaaagataaaaaagagccggccaaaaaactaaccggcgaacgcccaattgttagc
aaacaaaaacgaaaaccggccggcaaacaaggccgatttcagcaacgtcgcggtggcgga
gggcgtcaaaaaaaccagggacgcaacaggggaaaccaaaggcagcgttcaggttga
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