KEGG   Salicibibacter cibi: HUG20_10060
Entry
HUG20_10060       CDS       T07369                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
scib  Salicibibacter cibi
Pathway
scib03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scib00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HUG20_10060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scib03019]
    HUG20_10060
Messenger RNA biogenesis [BR:scib03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HUG20_10060
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 Lactamase_B_6 Mur_ligase_C ODP
Other DBs
NCBI-ProteinID: QQK80198
UniProt: A0A7T6ZAZ4
LinkDB
Position
complement(1972643..1974313)
AA seq 556 aa
MPKQEETNKVRVFALGGLGETGKNMYVVEVNDEIIVLDAGQMIPEDDMLGVDIVIADISY
LVQNSDRVKGIILSHGHEDHCGALPYVLRKLQVPVYGTKLTLGLIEGELKAQHLLKKTDL
KTVSSGDKVKIGNVKAEFFRVSHSIPDCVGVAIETPQGYVVYTGDFKFDQTPADHKFADV
GRMTQYGKKGVLCLLSDSTNAEIPGTTPSEKATEPGIKAVFREAPGRVIVSTYASNIYRI
QQVIDAAKETNRKVAVVGESMKKNIQISKRLGYLRIPKQLMVNVEELSKHRGEKIAILST
GSQGEPTSELHRMAKGTDRQLSIMPKDTVVISASPTPGKEKAIGRVVDFLYRVGAEVVHS
DKNVNVSGHASQEELMLMLNLMKPRHFIPIQGEYRMQIAHEKLAKTAGVHPERIHLLQNG
EVLQLEERNATKSTKVQAGNVLVDGLGIGDVGNIVLRDRRLLSKDGILVVVVTLSKKTNA
FVSGPDIISRGFVYVRESEELLDEAKQKVAETLRECMDDNVNEWSSLKSNIRDVLSRYLF
DKTKRRPMILPIIMEV
NT seq 1671 nt   +upstreamnt  +downstreamnt
ttgccgaagcaagaagagacaaataaagtacgtgtttttgccttgggcggactcggtgaa
acaggcaaaaatatgtatgtagtggaagtgaacgatgagatcatcgttttggacgcgggt
cagatgatcccggaagatgatatgctcggcgtcgatattgtcattgccgatatatcctat
ctcgtccaaaatagtgatcgtgtaaaagggattattctctcccacgggcacgaagatcac
tgcggggctttgccttatgttttacgaaaactacaggtgcccgtatatggaacaaaatta
accctcggcttgattgaaggggagttgaaagcccagcatttgctaaagaaaacagattta
aaaactgtttcttcgggggataaagtgaaaatcggcaacgtgaaagctgaatttttcagg
gtcagccatagcatccccgactgtgtcggcgttgctattgagacaccgcaagggtatgtc
gtatacaccggtgattttaagtttgaccagacccctgccgatcataaatttgccgatgtc
ggcagaatgacacaatacggaaaaaaaggcgttctttgtttattgtccgatagcaccaac
gcggaaatccccggcacaactccttcggaaaaagcaacggagccgggaatcaaggctgtg
tttcgcgaagcgccgggccgggttatcgtcagtacttatgcatcgaatatttaccgtatt
caacaagtcattgatgcagccaaggaaacgaaccgtaaagttgcggtggtcggtgaatcg
atgaagaaaaatattcaaatttccaagcgacttggttatttgcgaatccccaaacaatta
atggtcaacgtcgaagaattatccaagcatagaggggaaaagatcgcgattctttccacg
ggaagccaaggggagcctacctccgagttgcatcgaatggcgaaaggaaccgaccgccag
ctttcgattatgccgaaggataccgtcgtgatttcggcaagcccgaccccgggaaaggaa
aaagcaatcggacgagtcgtggattttctttacagagtcggagcagaagtcgttcactcc
gataaaaatgtaaatgtatccggacacgccagccaagaagaacttatgctcatgctcaat
ctcatgaaaccgcgccattttatcccgattcaaggggaataccgaatgcaaatcgcccac
gaaaaattggcgaagacggccggtgtccatcccgaacgaatccatttgctgcaaaacggt
gaagtgttgcagctcgaagaaagaaatgcgacgaaaagcacgaaagtccaagccggaaat
gtactcgtcgacggacttggcatcggcgacgtgggaaatatcgtattgagggatcgacgc
ttgttgtccaaggatggcatccttgttgtcgttgtcacattgagtaaaaaaaccaatgcc
tttgtttcaggtcccgatatcatttcccgcgggttcgtttatgttcgtgaatccgaagaa
ttgttggatgaagccaaacaaaaagtagccgaaacgttgcgcgagtgtatggatgacaac
gtaaacgaatggtcctccctcaaaagcaatattcgcgacgtgctcagccgttatcttttt
gataaaacgaaacggagaccgatgattttgccgattataatggaagtatga

DBGET integrated database retrieval system