Salicibibacter cibi: HUG20_10415
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Entry
HUG20_10415 CDS
T07369
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
scib
Salicibibacter cibi
Brite
KEGG Orthology (KO) [BR:
scib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scib03032
]
HUG20_10415 (topA)
03400 DNA repair and recombination proteins [BR:
scib03400
]
HUG20_10415 (topA)
Enzymes [BR:
scib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HUG20_10415 (topA)
DNA replication proteins [BR:
scib03032
]
Prokaryotic type
DNA Topoisomerases
HUG20_10415 (topA)
DNA repair and recombination proteins [BR:
scib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HUG20_10415 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QQK80264
UniProt:
A0A7T7CFR3
LinkDB
All DBs
Position
complement(2045357..2047429)
Genome browser
AA seq
690 aa
AA seq
DB search
MADYLVIVESPAKAKTIGKYLGKKYTVKASMGHVRDLPKSQMGVDVEQKYNPKYITIRGK
GPVLQELKQAAKKAKKVYLAADPDREGEAIAWHLAFSLGIDEDTPCRVVFNEITKPAIQE
AFKNPRTINTDLVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSIAVKMINDRER
EIQQFEPEEYWNIKGTFTYGKETFEAQFYGKGNKKEALKKKEDVDEVLGKITGNDFTIAS
VQKKERRRNPVQPFITSSLQQEAARKLNFRAKKTMMVAQQLYEGIELGKEGTVGLITYMR
TDSTRISETAKEEAQTYVQDKYGKQYVGGDRKPKKQGENTQDAHEAIRPTTVSREPKSVK
DYLSRDQLRLYRLIWERMVASRMAPAIMDTMTADLENGGMIFRATGSKIKFQGFMKVYVE
GSDDRKKEESKLLPALEEGHTAKKESLEPTQHFTQPPPRYTEARLVRTMEELGIGRPSTF
APTLDTIQRRGYVSLQDRRFVPTELGEIVLDLIVEFFPEILNVKFTAQMESDLDDVEEGK
ENWIEIIDTFYQGFEKRLKVADREMEEVEIKDEPVGEDCEKCGHPMVYKMGRYGRFMACS
NFPDCRNTKAILKPIGVKCPRCKEGNVVERKSKKQRTFYGCDRYPACEFVSWDKPIARPC
PKCQSLLVEKKAKKTVRVQCSNCDYREEPN
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcagattaccttgtaatcgttgaatctcccgctaaagcaaaaacgataggaaagtat
ttagggaaaaaatatacggtgaaagcatcgatgggacacgtgcgtgatttaccgaaatca
caaatgggtgtggatgtggagcagaaatataacccgaaatacattacgattcgcgggaaa
ggcccggttttacaggaattgaaacaagcagcgaaaaaagcaaaaaaagtttaccttgct
gcggaccccgaccgtgaaggggaagcgattgcctggcatttggcattcagcttggggatt
gatgaagatacgccttgccgggttgtgtttaatgaaatcacaaagcccgcgattcaggaa
gcattcaaaaacccacgcaccattaataccgatctcgttgatgcccaacaggcacgccga
attttagatcggctcgttggttacaacatcagtccgttgctttggaaaaaagtgaaaaaa
ggcttaagcgcaggacgtgtacaatcgatcgccgtaaagatgatcaatgatcgggagaga
gaaattcaacagtttgaacctgaagagtactggaatataaaaggaacatttacgtatgga
aaagaaacatttgaagcccaattttacggaaaaggaaacaaaaaagaggctctgaagaaa
aaagaagatgtggacgaagtccttggaaaaataacagggaacgattttacgattgcttcc
gtgcagaaaaaagaacggcgtcgcaatccggtacagcctttcatcacctcttcgcttcag
caggaagcggcccgaaagcttaatttccgtgcaaaaaagacgatgatggttgcccagcaa
ttgtacgaaggaatagagctgggaaaagaaggaactgtaggtttaattacgtatatgcgt
accgattccacacgaatttccgaaacggcaaaagaagaagcgcagacctatgttcaagat
aaatatggaaagcaatatgtaggcggcgaccgcaagccaaagaaacagggagagaacacc
caagacgcccacgaagccatccgtccaacgactgtctcccgtgagcccaaatcagtcaaa
gactatttgagtcgggatcagttaagactctatcgtctaatttgggaacgtatggtagcg
agtcgcatggcacctgcgatcatggatacaatgacggcagatttggaaaatggcggaatg
atctttcgggcaacgggatctaaaataaaatttcaaggattcatgaaagtttatgtggaa
ggaagcgacgatcgcaaaaaagaagaaagcaaacttcttcccgcgctcgaagaagggcac
acggccaaaaaagaatcgctggaaccgacgcaacattttacgcaaccgccgcccagatac
acggaagcacgactcgtgcgcacgatggaagaactgggaatcggccggccttccacgttt
gcgccaacgctggacaccattcagcgacgcgggtatgtctcattgcaggaccgtcgtttc
gtaccgacggagcttggagagattgtccttgatcttatcgtcgagtttttccccgaaatc
ttaaacgtgaagtttactgcccagatggaatcggatcttgacgacgttgaggaaggaaaa
gaaaactggatcgagatcatcgacaccttctaccaaggatttgagaaacggttaaaagtt
gccgatcgggaaatggaagaagtcgagatcaaagacgaaccggtaggggaagattgcgaa
aaatgcgggcatcccatggtttacaaaatgggaaggtatggaaggtttatggcttgctcc
aattttcccgattgcaggaacacaaaggccattctaaaaccgatcggtgtaaaatgtccg
cggtgtaaagaagggaacgtcgtggaacgaaaaagcaaaaaacaacggacattttacgga
tgcgatcgatatccggcgtgtgagttcgtgtcttgggataagccgattgcgcggccgtgc
ccgaagtgccagagcctactcgtcgagaaaaaagccaaaaaaacagtgcgggtacagtgt
tcgaattgcgattaccgcgaagagcccaattag
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