Streptomyces cinnabarinus: STRCI_000162
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Entry
STRCI_000162 CDS
T08957
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scir
Streptomyces cinnabarinus
Pathway
scir03030
DNA replication
scir03410
Base excision repair
scir03420
Nucleotide excision repair
scir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STRCI_000162 (ligA)
03410 Base excision repair
STRCI_000162 (ligA)
03420 Nucleotide excision repair
STRCI_000162 (ligA)
03430 Mismatch repair
STRCI_000162 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scir03032
]
STRCI_000162 (ligA)
03400 DNA repair and recombination proteins [BR:
scir03400
]
STRCI_000162 (ligA)
Enzymes [BR:
scir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STRCI_000162 (ligA)
DNA replication proteins [BR:
scir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STRCI_000162 (ligA)
DNA repair and recombination proteins [BR:
scir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STRCI_000162 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STRCI_000162 (ligA)
MMR (mismatch excision repair)
DNA ligase
STRCI_000162 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STRCI_000162 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
WAZ19131
LinkDB
All DBs
Position
173982..176066
Genome browser
AA seq
694 aa
AA seq
DB search
MTTPAAEIMDAAAYAQAVEDAVKAAAAYYAGGTSPMDDDAYDRLVRGIANWEAEHPAQVL
PDSPTGKVAGGAVEGDVPHTVPMLSLDNVFSAEEFTAWIASLARRLGHDVTVFSVEPKLD
GLAIAARYTHGRLRQLVTRGDGTAGEDVSHAIGTIEGLPIELSEPVCVEVRGEVLMTTAQ
FEHANEVRTQHGGQPFANPRNAAAGTLRAKDRAYTVPMTFFGYSLLPLPDTDPALTEQLG
LRAHSELMARAAELGVNTTASTAVPGVTADAGEEVLARVKEIAALRAELPFGIDGVVIKA
DLAADQQAAGSGSRAPRWAIAYKLPAVEKITRLLEVEWNVGRTGIIAPRAVLEPVEIDGS
TITYATLHNPADITRRDLRLGDHVMVYRAGDVIPRVEAPVAHLRTGDELPIVFPEVCPRC
GSSIDTSEQRWRCENGRNCHLVASLSYAAGRDQLDIEGLGHTRVVQLVDAGLVSDLADLF
TLTRDQLLALERMGVTSTDNLLAALGAAKRQPLSRVLCALGVRGTGRSMSRRIARHFATM
DQVRAADAETMQQVEGIGTEKAPSIVSELAELAPLIDKLAAAGVNMTEPGVTPRAADTDA
SDTSSEAQEADLPLAGMTVVVTGSMTGPLEKLSRNQMNELIERAGGRSSSSVSKKTTLVV
AGDGAGSKRAKAEDLGLRLATPDEFAALIADFLD
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaccagctgcagagatcatggatgccgccgcctacgcgcaggcggtcgaggac
gcggtgaaggccgcggccgcgtactacgcgggcggtacgtcgcccatggacgacgacgcc
tatgaccggctggtgcgtggcatcgcgaactgggaggccgagcatcccgcgcaggtgctg
ccggactcgccgacgggcaaggtcgccgggggcgccgtcgagggggacgtgccgcacacg
gtgccgatgctcagcttggacaacgtgttctccgccgaggagttcaccgcctggatcgcc
tcgctggcccgacgcctcgggcacgacgtcaccgtcttcagcgtcgagccgaagctcgac
ggactggcgatcgcggcacggtacacccacggccgcctcagacagctcgtcacgcgtggg
gacgggacggccggggaggacgtctcgcacgcgatcggcaccatcgaggggctgccgatc
gagctgtccgagccggtctgcgtggaggtgcgcggcgaagtcctgatgacgacggcccag
ttcgagcacgccaacgaggtgcgcacgcagcacggcggacagcccttcgccaacccgcgc
aacgctgcggcgggcaccttgcgcgccaaggaccgtgcctacaccgtgccgatgacgttc
ttcggctacagtctgctccccctgcccgacaccgaccccgcgctcaccgaacagctcggc
ctgcgggcgcacagcgagctgatggcgcgggccgccgagttgggggtgaacaccaccgcg
agcacggccgtccccggcgtcaccgccgacgcgggcgaggaagtgctggcgcgcgtaaag
gagatcgcggcactgcgcgccgagctgccgttcgggatcgacggggtcgtcatcaaggcc
gacctggccgccgaccagcaggccgccgggtccgggtcgcgggccccgcgctgggcgatc
gcctacaagctcccggcggtggagaagatcacccggctgctggaggtggagtggaacgtg
ggccgcaccggcatcatcgccccgcgcgccgtcctggagccggtggagatcgacggctcc
accatcacctacgccacgctgcacaaccccgccgacatcacccggcgcgacctgcgcctg
ggcgaccacgtcatggtctaccgggccggcgatgtcatcccccgcgtcgaagcccccgtc
gcccacctgcgcaccggcgacgaactacccatcgtcttccccgaggtgtgcccgcgctgc
ggttcgagcatcgacaccagcgagcagcgttggcggtgcgagaacggccgcaactgccat
ctggtggcatccctttcctacgccgccggccgcgaccagctcgacatcgagggcctgggc
cacacccgtgtcgtccagctcgtcgacgccggcctggtcagcgatctcgccgacctcttc
accctcacccgcgaccagctcctggccctggaacggatgggcgtgaccagcaccgacaac
ctcctcgccgcgctgggcgccgccaagcgccagccgctgtcgcgggtgctgtgtgcgctg
ggggtacggggcaccgggcgctccatgtcccggcgtatcgcccgccacttcgccaccatg
gaccaggtgcgggccgccgatgcggaaacgatgcagcaggtcgagggcatcggcaccgag
aaggccccgtcgattgtctccgagctggccgaactcgccccgctcatcgacaagctcgcc
gcggccggggtgaacatgaccgaacccggcgtcaccccacgcgcggcggacaccgacgcc
tcggacacctccagcgaggctcaggaggcggacctgccgctggcgggaatgaccgtcgtc
gtcaccggctcgatgaccggccccctggagaagctctcccgcaaccagatgaacgagctg
atcgaacgcgccggcggccgttcctcctccagcgtgtccaagaagaccaccctggtcgtc
gccggagacggtgccggttccaagcgcgccaaggccgaggacctcgggctccgcctggcc
acaccggacgaattcgccgcgctcatcgccgacttcctcgactga
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