Streptomyces cinnabarinus: STRCI_005665
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Entry
STRCI_005665 CDS
T08957
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scir
Streptomyces cinnabarinus
Pathway
scir03030
DNA replication
scir03410
Base excision repair
scir03420
Nucleotide excision repair
scir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STRCI_005665 (ligA)
03410 Base excision repair
STRCI_005665 (ligA)
03420 Nucleotide excision repair
STRCI_005665 (ligA)
03430 Mismatch repair
STRCI_005665 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scir03032
]
STRCI_005665 (ligA)
03400 DNA repair and recombination proteins [BR:
scir03400
]
STRCI_005665 (ligA)
Enzymes [BR:
scir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STRCI_005665 (ligA)
DNA replication proteins [BR:
scir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STRCI_005665 (ligA)
DNA repair and recombination proteins [BR:
scir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STRCI_005665 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STRCI_005665 (ligA)
MMR (mismatch excision repair)
DNA ligase
STRCI_005665 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STRCI_005665 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
WAZ24261
LinkDB
All DBs
Position
6213616..6215808
Genome browser
AA seq
730 aa
AA seq
DB search
MAGDKQAETTVPAEAREKHAKLAEQIEEHRFRYYVKDAPVVSDAEFDKLLRALEALEEEY
SELRTPDSPTQKVAGAYETEFTAVQHRQRMLSLDNAFDDLELAAWAERVHKDVGASVYHF
LCELKVDGLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLSGDGVPDLVEI
RGEVYFPMEKFEELNARLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAL
EGFEGLTRLSQAYDLLKTWGLPTSRHNKVVGDLDGVRAFIAYYGENRHSVEHEIDGVVVK
LDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAG
SEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECPE
CGTALRPMKEGDVDLRCPNARSCPAQLRERLFYLAGRKSLDIEHFGYVAAAALTKPLEPS
EPPLVDEGDLFDLTIERLLPIKAYVLDQDSGLPKRDPKSGEEKVAMVFANQQGEAKKNAL
AMLENIQAAKERPLARVLTGLSIRHVGPVAAEALAREFRSIERIEQASEEELAATDGVGG
IIAASLKEWFAEEWHQEILRKWRAAGVRMEEEGSGEDEGPRPLEGLTVVVTGTLERFTRD
GAKEELQTRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFRVLLEQGPEA
AAEVALPTEE
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagacgacggtgcccgccgaggcgcgggagaagcacgcc
aagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgccccggtc
gtcagcgacgcggagttcgacaagctcctgcgcgcgctggaggccctggaggaggagtac
tcggagctgcgcaccccggactcgccgacccagaaggtcgcgggcgcgtacgagacggag
ttcaccgccgtccagcaccggcagcggatgctctcgctggacaacgccttcgacgacctg
gagctcgccgcctgggccgagcgcgtccacaaggacgtcggcgcctccgtgtaccacttc
ctgtgcgagctgaaggtcgacggcctcgccgtgaacctgacgtacgagcggggacggctc
acccgtgcggcgacccgcggcgacggccgtaccggcgaggacatcacgccgaacgtgcgc
accatcgccgagatcccggaccggctcagcggcgacggcgtcccggacctggtggagatc
cgcggcgaggtctacttcccgatggagaagttcgaggagctcaacgcccgcctggtcgcg
gccggtgacaagcccttcgccaacccgcgcaacgccgcggccggttcgctgcgccagaag
gacccgcgggtcaccgccacccggccgctgcacatggtcgtccacggcatcggcgccctg
gagggcttcgagggcctgacccgcctctcccaggcgtacgacctgctcaagacctggggc
ctgcccacctcccggcacaacaaggtggtcggcgacctcgacggcgtccgcgcgttcatc
gcgtactacggcgagaaccgccactccgtggagcacgagatcgacggcgtcgtcgtcaag
ctcgacgagatcccgctccagggccgcctcggctccacctcccgggctccgcgctgggcc
atcgcgtacaagtacgcgccggaggaggtcaacaccaagctggtcaacatccgggtgggc
gtgggccgtacgggccgggtcacgccgtacgcccaggtcgagccggtgacggtggccggt
tccgaggtcgagttcgccaccctgcacaaccaggacgtggtcaaggccaagggcgtcctg
atcggcgacaccgtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggtccg
gtcgccgacctgcgcgacggcagcgagcgcgagttcgtgatgccggccgagtgccccgag
tgcggtacggcactgcggcccatgaaggagggcgacgtcgacctgcgctgcccgaacgcg
cggagctgcccggcgcagttgcgggagcgcctgttctacctcgcgggccgcaagtcgctg
gacatcgagcacttcggctacgtcgccgccgcggccctcaccaagccgctggagccgtcg
gagccgccgctggtcgacgagggcgacctgttcgacctcaccatcgagcggctgctgccc
atcaaggcgtacgtcctggaccaggacagcggtctgcccaagcgggacccgaagagcggc
gaggagaaggtcgccatggtcttcgccaaccagcagggcgaggcgaagaagaacgcgctt
gccatgctggagaacatccaagcggccaaggaacgccccctcgcccgggtgctcacgggc
ctgtcgatccgtcatgtgggaccggtcgccgccgaggcgctggcccgcgaattccgctcg
atcgagcggatcgagcaggccagtgaggaggagctggccgccaccgacggcgtcggcggg
atcatcgcggcctcgctgaaggagtggttcgccgaggagtggcaccaggagatcctccgc
aagtggcgggcggccggcgtgcgcatggaggaggagggctccggcgaggacgaggggcca
cgcccgctggagggcctgaccgtggtcgtgaccggcactctggagcgtttcacccgggac
ggcgccaaggaggagctccagacccggggagccaaggtgaccggttcggtttcgaagaag
acgtcattcgtcgtcgtgggtgacaatcctggttcgaagtacgacaaggcgatgcagctg
aaggtgccggttctgaacgaggacggcttcagagtcctgctggaacagggccccgaggcg
gcggccgaagtcgcgcttccgaccgaggagtag
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