KEGG   Streptomyces citrinus: V2W30_27935
Entry
V2W30_27935       CDS       T11106                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
scit  Streptomyces citrinus
Pathway
scit03030  DNA replication
scit03410  Base excision repair
scit03420  Nucleotide excision repair
scit03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:scit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    V2W30_27935 (ligA)
   03410 Base excision repair
    V2W30_27935 (ligA)
   03420 Nucleotide excision repair
    V2W30_27935 (ligA)
   03430 Mismatch repair
    V2W30_27935 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:scit03032]
    V2W30_27935 (ligA)
   03400 DNA repair and recombination proteins [BR:scit03400]
    V2W30_27935 (ligA)
Enzymes [BR:scit01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     V2W30_27935 (ligA)
DNA replication proteins [BR:scit03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     V2W30_27935 (ligA)
DNA repair and recombination proteins [BR:scit03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     V2W30_27935 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     V2W30_27935 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     V2W30_27935 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      V2W30_27935 (ligA)
SSDB
Other DBs
NCBI-ProteinID: WWQ66794
LinkDB
Position
5984378..5986594
AA seq 738 aa
MAAASAGNTAGAKDPVPAEARDEHARIAEQIEEHRFRYYVKDAPVVSDAEFDKLLRSLEA
LEEQYPELRTPDSPTQKVAGNYETEFTSVEHRERMLSLDNAFDDAELAAWADRVAKDVGA
PGYHFLCELKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTITEIPDRLKGDRVP
ALVEIRGEVFFPMDKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVH
GIGAREGFDIDRLSQAYELLREWGLPTAKHNRVVDDLKGVREFIAYFGENRHSVEHEIDG
AVVKLDEIPLQGRLGSTARAPRWAIAWKFPPEEVNTKLVNIRVGVGRTGRVTPYAQVEPV
TVAGSEVEFATLHNQEVVKKKGVLIGDTVVIRKAGDVIPEILGPVADLRDGSEYAFVMPA
ECPECGTALRAMKEGDIDLRCPNARTCPAQLRERLFYLGGRQCLDIENFGAVAAAALTAP
LEPAEPPLTDEGDLFDLTIEQLLPIKAYVLDPDSGLPKRDPKTGEDKVVTVFANQKGEPK
KNAVAMLEHIDAAKTRPLARVINGLSIRHVGPVAAEALAREFRSIDRIDQATEEELAATD
GVGGIIAASVKQWFAEDWHREILRKWRAAGVRMEEEGAGEDEGPRPLEGLTVVVTGTLQN
FTRDGAKEALQTRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQVKVPVLDEDGFAVLLEQ
GPEAAAEVALPAEEPTEE
NT seq 2217 nt   +upstreamnt  +downstreamnt
gtggctgccgcaagcgcgggaaacacggcaggggcgaaggaccccgtgcccgccgaagcg
cgggacgagcacgcccggatcgccgagcagatcgaggagcaccgcttccgctactacgtg
aaggacgcgccggtcgtctcggacgccgagttcgacaagctgctgcgctccctggaggcg
ctggaggagcagtacccggagctgcgcacaccggactcgccgacgcagaaggtcgcgggg
aactacgagacggagttcacgtccgtcgagcaccgcgagcgcatgctctcgctggacaac
gccttcgacgacgcggagttggcggcctgggccgaccgcgtcgccaaggacgtcggcgcc
cccggctaccacttcctgtgcgagctgaaggtcgacggcctcgcggtcaacctgacgtac
gagaacgggcggctcacgcgcgcggcgacccgcggcgacggccgcgtcggcgaggacatc
acgccgaacgtccgcacgatcaccgagatccccgaccgcctcaagggcgaccgcgtcccc
gccctcgtcgagatccgcggcgaggtcttcttccccatggacaagttcgaggagctgaac
gcccgactggtggaggccggcgacaagcccttcgccaacccccgcaacgcggcggcgggt
tcgctccgccagaaggacccgcgcgtcaccgcgacccgccccctgcacatggtcgtccac
ggcatcggcgcccgtgagggcttcgacatcgaccgcttgtcgcaggcctacgagctgctg
cgtgaatggggcctgcccaccgcgaagcacaacagggtggtcgacgacctcaagggcgta
cgggagttcatcgcgtacttcggggagaaccgccactccgtggagcacgagatcgacggt
gccgtcgtcaagctcgacgagatcccgctccagggccgcctcggttccacggcacgcgcc
ccgcgctgggccatcgcctggaagttcccgcccgaagaggtcaacaccaagctggtcaac
atccgggtgggcgtgggccgcaccggccgcgtcaccccgtacgcgcaggtggagccggtc
accgtcgccggctccgaggtcgagttcgccaccctgcacaaccaggaggtcgtcaagaag
aagggcgtcctcatcggggacaccgtcgtcatccgcaaggccggtgacgtcatccccgag
atcctcggcccggtcgccgacctgcgcgacggcagcgagtacgcgttcgtgatgcccgcc
gagtgccccgagtgcggcaccgcgctgcgggccatgaaagagggcgacatcgacctgcgg
tgtcccaacgcccgcacgtgtccggcccagttgcgggagcggctgttctacctcggcggc
cggcagtgcctcgacatcgagaacttcggggccgtggccgccgccgcgctgaccgccccc
ctggagccggccgagccgccgctcaccgacgagggcgacctcttcgatctcaccatcgag
cagctcctgcccatcaaggcgtacgtcctcgacccggacagcgggctgcccaagcgcgac
ccgaagaccggcgaggacaaggtcgtcacggtcttcgccaaccagaagggcgagccgaag
aagaacgcggtggcgatgctggagcacatcgacgccgccaagacccgcccgctcgcccgc
gtcatcaacggcctgtcgatccggcacgtcggcccggtcgcggccgaggcgctggcccgc
gagttccgctccatcgaccgcatcgaccaggccaccgaggaggaactcgccgcgaccgac
ggcgtcggcgggatcatcgccgcgtcggtgaagcagtggttcgccgaggactggcaccgg
gagatcctgcgcaagtggcgcgcggccggtgtgcgcatggaggaggagggcgcgggcgag
gatgaggggccgcgcccgctcgaaggtctcaccgtcgtcgtcaccggaacgctccagaac
ttcaccagggacggtgcgaaagaggccctccagaccagaggcgccaaggtgaccggttcc
gtttccaagaagacgtccttcgtggtcgtcggggacaacccgggatcgaagtacgacaag
gccatgcaggtgaaggttccggttctggacgaggacgggttcgccgtcctgctggaacaa
gggccggaagcggccgccgaagtggcacttcccgccgaagagccgaccgaggagtag

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