Streptomyces citrinus: V2W30_27935
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Entry
V2W30_27935 CDS
T11106
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scit Streptomyces citrinus
Pathway
scit03030
DNA replication
scit03410
Base excision repair
scit03420
Nucleotide excision repair
scit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V2W30_27935 (ligA)
03410 Base excision repair
V2W30_27935 (ligA)
03420 Nucleotide excision repair
V2W30_27935 (ligA)
03430 Mismatch repair
V2W30_27935 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scit03032
]
V2W30_27935 (ligA)
03400 DNA repair and recombination proteins [BR:
scit03400
]
V2W30_27935 (ligA)
Enzymes [BR:
scit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V2W30_27935 (ligA)
DNA replication proteins [BR:
scit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V2W30_27935 (ligA)
DNA repair and recombination proteins [BR:
scit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V2W30_27935 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V2W30_27935 (ligA)
MMR (mismatch excision repair)
DNA ligase
V2W30_27935 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V2W30_27935 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WWQ66794
LinkDB
All DBs
Position
5984378..5986594
Genome browser
AA seq
738 aa
AA seq
DB search
MAAASAGNTAGAKDPVPAEARDEHARIAEQIEEHRFRYYVKDAPVVSDAEFDKLLRSLEA
LEEQYPELRTPDSPTQKVAGNYETEFTSVEHRERMLSLDNAFDDAELAAWADRVAKDVGA
PGYHFLCELKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTITEIPDRLKGDRVP
ALVEIRGEVFFPMDKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVH
GIGAREGFDIDRLSQAYELLREWGLPTAKHNRVVDDLKGVREFIAYFGENRHSVEHEIDG
AVVKLDEIPLQGRLGSTARAPRWAIAWKFPPEEVNTKLVNIRVGVGRTGRVTPYAQVEPV
TVAGSEVEFATLHNQEVVKKKGVLIGDTVVIRKAGDVIPEILGPVADLRDGSEYAFVMPA
ECPECGTALRAMKEGDIDLRCPNARTCPAQLRERLFYLGGRQCLDIENFGAVAAAALTAP
LEPAEPPLTDEGDLFDLTIEQLLPIKAYVLDPDSGLPKRDPKTGEDKVVTVFANQKGEPK
KNAVAMLEHIDAAKTRPLARVINGLSIRHVGPVAAEALAREFRSIDRIDQATEEELAATD
GVGGIIAASVKQWFAEDWHREILRKWRAAGVRMEEEGAGEDEGPRPLEGLTVVVTGTLQN
FTRDGAKEALQTRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQVKVPVLDEDGFAVLLEQ
GPEAAAEVALPAEEPTEE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtggctgccgcaagcgcgggaaacacggcaggggcgaaggaccccgtgcccgccgaagcg
cgggacgagcacgcccggatcgccgagcagatcgaggagcaccgcttccgctactacgtg
aaggacgcgccggtcgtctcggacgccgagttcgacaagctgctgcgctccctggaggcg
ctggaggagcagtacccggagctgcgcacaccggactcgccgacgcagaaggtcgcgggg
aactacgagacggagttcacgtccgtcgagcaccgcgagcgcatgctctcgctggacaac
gccttcgacgacgcggagttggcggcctgggccgaccgcgtcgccaaggacgtcggcgcc
cccggctaccacttcctgtgcgagctgaaggtcgacggcctcgcggtcaacctgacgtac
gagaacgggcggctcacgcgcgcggcgacccgcggcgacggccgcgtcggcgaggacatc
acgccgaacgtccgcacgatcaccgagatccccgaccgcctcaagggcgaccgcgtcccc
gccctcgtcgagatccgcggcgaggtcttcttccccatggacaagttcgaggagctgaac
gcccgactggtggaggccggcgacaagcccttcgccaacccccgcaacgcggcggcgggt
tcgctccgccagaaggacccgcgcgtcaccgcgacccgccccctgcacatggtcgtccac
ggcatcggcgcccgtgagggcttcgacatcgaccgcttgtcgcaggcctacgagctgctg
cgtgaatggggcctgcccaccgcgaagcacaacagggtggtcgacgacctcaagggcgta
cgggagttcatcgcgtacttcggggagaaccgccactccgtggagcacgagatcgacggt
gccgtcgtcaagctcgacgagatcccgctccagggccgcctcggttccacggcacgcgcc
ccgcgctgggccatcgcctggaagttcccgcccgaagaggtcaacaccaagctggtcaac
atccgggtgggcgtgggccgcaccggccgcgtcaccccgtacgcgcaggtggagccggtc
accgtcgccggctccgaggtcgagttcgccaccctgcacaaccaggaggtcgtcaagaag
aagggcgtcctcatcggggacaccgtcgtcatccgcaaggccggtgacgtcatccccgag
atcctcggcccggtcgccgacctgcgcgacggcagcgagtacgcgttcgtgatgcccgcc
gagtgccccgagtgcggcaccgcgctgcgggccatgaaagagggcgacatcgacctgcgg
tgtcccaacgcccgcacgtgtccggcccagttgcgggagcggctgttctacctcggcggc
cggcagtgcctcgacatcgagaacttcggggccgtggccgccgccgcgctgaccgccccc
ctggagccggccgagccgccgctcaccgacgagggcgacctcttcgatctcaccatcgag
cagctcctgcccatcaaggcgtacgtcctcgacccggacagcgggctgcccaagcgcgac
ccgaagaccggcgaggacaaggtcgtcacggtcttcgccaaccagaagggcgagccgaag
aagaacgcggtggcgatgctggagcacatcgacgccgccaagacccgcccgctcgcccgc
gtcatcaacggcctgtcgatccggcacgtcggcccggtcgcggccgaggcgctggcccgc
gagttccgctccatcgaccgcatcgaccaggccaccgaggaggaactcgccgcgaccgac
ggcgtcggcgggatcatcgccgcgtcggtgaagcagtggttcgccgaggactggcaccgg
gagatcctgcgcaagtggcgcgcggccggtgtgcgcatggaggaggagggcgcgggcgag
gatgaggggccgcgcccgctcgaaggtctcaccgtcgtcgtcaccggaacgctccagaac
ttcaccagggacggtgcgaaagaggccctccagaccagaggcgccaaggtgaccggttcc
gtttccaagaagacgtccttcgtggtcgtcggggacaacccgggatcgaagtacgacaag
gccatgcaggtgaaggttccggttctggacgaggacgggttcgccgtcctgctggaacaa
gggccggaagcggccgccgaagtggcacttcccgccgaagagccgaccgaggagtag
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