Spiroplasma citri: SCITRI_001783
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Entry
SCITRI_001783 CDS
T04628
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sck
Spiroplasma citri
Pathway
sck03030
DNA replication
sck03410
Base excision repair
sck03420
Nucleotide excision repair
sck03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sck00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCITRI_001783 (ligA)
03410 Base excision repair
SCITRI_001783 (ligA)
03420 Nucleotide excision repair
SCITRI_001783 (ligA)
03430 Mismatch repair
SCITRI_001783 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sck03032
]
SCITRI_001783 (ligA)
03400 DNA repair and recombination proteins [BR:
sck03400
]
SCITRI_001783 (ligA)
Enzymes [BR:
sck01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCITRI_001783 (ligA)
DNA replication proteins [BR:
sck03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCITRI_001783 (ligA)
DNA repair and recombination proteins [BR:
sck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCITRI_001783 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCITRI_001783 (ligA)
MMR (mismatch excision repair)
DNA ligase
SCITRI_001783 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCITRI_001783 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
APE75649
LinkDB
All DBs
Position
complement(1465388..1467466)
Genome browser
AA seq
692 aa
AA seq
DB search
MAFQKTNTPPTLQQESKNNKIKEDIMTFEQAKKRSLVLKEQLEKWNYEYYVNDNPSVSDQ
EYDRALQELIAIEQQYSELITIDSPTQRVSGQISEKFNKYVHTSPMLSLGNAFNYDDLIH
FDEQIKEFTALPEIEYTCELKIDGLSISLVYDNHVLVMGATRGDGLTGEDVTINIKQIKS
IPLRIDQPTLIVRGEVYLSVEEFNKINEERVKNGEFKFANPRNAAAGTLRQLDSKIVAKR
KLNAFLYYYVNALQDGIQSQYEALQRLEQLKFKINHEYRYCSNIAAVWAYIQEYEPKRNQ
LGYEIDGIVIKVNNLNLYNRIGYTAKNPKWAIAYKFPAEVVVTKLLNIFPSVGRTGRITY
NAVLEPIRIVGTIVRAATLHNADFITERDIRIGDNVQVKKAGDIIPEVINYVAARRQKNA
QKWQEATHCPECNSLLERVEGEVDQYCINSVCPKKITRGLEHYCSRNAMNIEGISEKIIE
RLFKLEYLKSFSDLYQLEQYRAEIIELENFGEKSFENMITSINNSKNNSLERLLFALGIR
HVGQKTAKLLARQFKTIDNLAAMNIEQLSIINDIGPIVAASVVDYFAIPANQQELALLRQ
NGVKMEYFATNQHLAQKFENYRFVITGVLSKSREYFKELIESYGGQVSESVSAKTTYLLA
GTDAGNKLVKAQKLNVKIINEEEFQQLLSKED
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcatttcaaaaaaccaacaccccccccacattacaacaagaatctaaaaataataaa
ataaaggaagatattatgacttttgagcaagcaaaaaaacgtagtttagtgttaaaagaa
caattagaaaaatgaaattatgaatattatgttaatgataaccctagtgttagtgaccaa
gaatatgatcgagcattgcaagaattaattgcaattgaacagcaatatagtgaattaatt
acaattgattcaccaacgcaacgtgtttctggccaaattagtgaaaagtttaataaatat
gttcatacaagtccaatgctaagtttaggaaacgcgtttaattatgatgatttaattcat
tttgatgagcaaattaaagaatttactgctttgccagaaattgaatatacttgtgaatta
aaaattgatggattatcaatttcattagtttatgataatcatgttttagtgatgggggca
actcggggagatggtcttaccggtgaagatgttactattaatattaaacaaattaaatcg
attccccttcgaattgaccaaccaactttaattgttcggggagaagtttatttatcagtt
gaagagtttaataagattaatgaagaacgtgttaaaaatggtgaatttaaatttgctaat
cctcgaaatgcagcagcaggcactttacgtcaattagattcaaaaattgttgcaaaacga
aagttaaatgcatttttatattattatgttaatgctttacaggatgggattcaatcacaa
tacgaagcattacaaagattagaacaattgaaatttaaaataaatcatgaatatcgttat
tgttcaaatattgcagcagtgtgagcatatattcaagaatatgagccaaaacgtaatcag
ttaggttatgaaattgatggaattgtgattaaagttaataacttaaatttatataatcgt
attggttatactgctaaaaatccaaaatgagcaatcgcttataaatttccagcggaagtt
gtggttactaaattgcttaatatttttccttccgttgggagaacggggcgcattacttat
aatgctgttcttgaaccaattcgtattgtaggaacaatcgtacgagctgcaacactacat
aatgctgattttattactgaacgtgatattcggattggtgataatgtccaagttaaaaaa
gcgggggatattattccagaagtaattaattatgttgcagctcgtcgccaaaaaaatgct
cagaagtgacaagaagcaacgcattgcccagaatgtaattctttattagaacgtgttgaa
ggggaggttgaccagtattgcattaattctgtttgtccgaaaaaaattacacgtggatta
gaacattattgttcacgaaatgcgatgaatattgaaggaattagtgaaaaaataattgaa
cgattatttaaattagaatatttaaaaagttttagtgatttatatcaattagaacaatac
cgcgctgaaattattgaattagaaaattttggtgaaaaatcgtttgaaaatatgattact
tcaattaataattcaaaaaataattccttagaacgattattatttgcgttaggaattcgt
catgttggtcaaaaaacagcaaaattattagcacgacaatttaaaacaattgataattta
gctgcgatgaatattgaacaattatcaattattaatgatattggtccaattgtagcagct
agtgttgtggattattttgcaattccagctaaccaacaagaactggctttattacgccaa
aatggggttaaaatggagtattttgctactaatcagcatttagcacagaagtttgaaaat
tatcggtttgtgattactggagtcttatcaaaatcacgagaatactttaaagaattaatt
gaaagttatggtggacaagtttctgaaagtgttagtgcaaaaaccacttatttactggcg
ggaactgatgctggtaataaattagtaaaagcacaaaaattaaatgttaaaattattaat
gaagaagaatttcaacaattattaagtaaggaggactaa
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