Spiroplasma clarkii: SCLARK_001788
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Entry
SCLARK_001788 CDS
T05330
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scla
Spiroplasma clarkii
Pathway
scla03030
DNA replication
scla03410
Base excision repair
scla03420
Nucleotide excision repair
scla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCLARK_001788 (ligA)
03410 Base excision repair
SCLARK_001788 (ligA)
03420 Nucleotide excision repair
SCLARK_001788 (ligA)
03430 Mismatch repair
SCLARK_001788 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scla03032
]
SCLARK_001788 (ligA)
03400 DNA repair and recombination proteins [BR:
scla03400
]
SCLARK_001788 (ligA)
Enzymes [BR:
scla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCLARK_001788 (ligA)
DNA replication proteins [BR:
scla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCLARK_001788 (ligA)
DNA repair and recombination proteins [BR:
scla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCLARK_001788 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCLARK_001788 (ligA)
MMR (mismatch excision repair)
DNA ligase
SCLARK_001788 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCLARK_001788 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
YcaO_C
IBR_2
Motif
Other DBs
NCBI-ProteinID:
ARU92233
LinkDB
All DBs
Position
complement(1471051..1472577)
Genome browser
AA seq
508 aa
AA seq
DB search
MIADLDDYVEIRGEVFLNKTEFNKINAQRKAKDEPLFANPRNAAAGTVRQLDSSIAAERN
LDAFLYYYMNREKISTHSQSMTHLQSMNFKVNNLGQHCPDIQAVIEHVNYLNTLRHDLDY
EIDGVVIKVNEFDLYEEIGYTSKFPKWAIAFKFPAEVKTTKLLDIFPTVGRTGRITYNAV
LEPVGLAGTTVQAATLHNADFIVERDIRVGANVKVKKAGDIIPEIIEPIKDENFVNLPIW
QESQNCPECNSPLERTVGEVDQYCINSSCPRKIIRSLEHFASREAMNIEGLSIKIIEKLY
ENGFVKNIADIYKLKTVRTNLLELDNMGEKSVDNLLQAIENTKQNSAEKLFFGLGIRYVG
KKTAQLLVINFKSILNLKNQDFDTIATIHDIGPTVSQAVVDWFKVQANLDLVTELQSLGL
NTDYLGNVGSKFNEEISNKSFVITGTLSKPRNHFKSILEEHGAKVIDSVSKKTDYLLAGS
EAGSKLEKAQKLNVKIINEEEFKELIGE
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgatagcagatttagatgattatgttgaaattaggggagaggtctttttaaataaaact
gaatttaacaaaattaatgctcaaagaaaagcaaaagatgaaccactatttgccaatccc
cgaaatgcagcagctggaactgtgcgtcaattagactcaagtattgctgcagaaagaaat
ttagatgcttttttgtattattacatgaatcgtgaaaaaatttcaactcatagtcaatca
atgacacacttgcaatcaatgaatttcaaagtgaacaatttaggccaacattgcccagat
attcaagctgtaattgaacatgttaattacttaaacactttaagacatgatttggactat
gaaattgatggagttgttattaaggttaatgagtttgatttatatgaagaaattggttac
acatcaaaatttcccaagtgagctattgcctttaaatttccagcagaggttaaaaccacc
aaactccttgatatctttccaactgtagggagaactgggagaattacttataatgcagtt
ctagaaccagtgggtttggcaggaactacagtgcaagcagccactttacataatgctgat
tttattgtggaaagagatattagagttggagcaaatgttaaagttaaaaaagcaggagac
attattccagaaattattgaaccaataaaggatgaaaattttgttaatttacctatttga
caagaaagtcaaaactgtccagagtgtaactctcccttagaaagaacagttggtgaagtg
gatcaatattgtattaacagttcttgtccaagaaaaatcatccgttcattagaacatttt
gccagtcgtgaagctatgaacattgagggtttaagtattaaaattattgaaaaactttat
gagaatggttttgttaaaaacattgcagatatttataaactaaaaacagttagaaccaat
ttactagaattagataatatgggagaaaaatcagttgataatttattgcaagccattgaa
aatactaaacaaaattctgctgaaaaacttttctttggtttaggaattagatatgttggt
aaaaaaacagcccagttattggtaataaactttaaatcaattttaaacttaaaaaatcaa
gattttgacacaattgccactattcatgatattggaccaactgtttcacaagctgtggtt
gactgatttaaagtccaagccaacttggacttagttactgagttgcaaagtttaggcttg
aatactgattatttaggtaatgttggttcaaaatttaatgaagaaatttcaaataaaagt
tttgtaattactggaactttatcaaaacctcggaaccactttaaaagtattttagaagaa
catggagcaaaagtaattgatagtgtcagcaaaaaaactgattatttactggcaggaagt
gaagctggaagtaaattagaaaaggcccaaaaattaaatgttaaaataatcaatgaagaa
gaatttaaagaacttataggagaataa
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