Styela clava (leathery sea squirt): 120327746
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Entry
120327746 CDS
T07291
Name
(RefSeq) telomerase-binding protein EST1A-like
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120327746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120327746
03032 DNA replication proteins [BR:
sclv03032
]
120327746
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
120327746
mRNA cycle factors
Common to processing body (P body) and stress granule
120327746
DNA replication proteins [BR:
sclv03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
120327746
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
120327746
NCBI-ProteinID:
XP_039250034
LinkDB
All DBs
Position
Unknown
AA seq
1273 aa
AA seq
DB search
MSDGKRLDVIKLDEKKLWKLHEKLKKLQAKENETTTHSDNIKKPIERKSKPVKYQVYQPG
VTRLSNRKLAASFDRSTVENSSPVVKETPKSKNESLTNSTPRGNDSINHRKDSKLTPKPN
SNKNVRGRRTNYRNRVSRNQKLKEEPEVEAEEGFLTRHKRRQKQGDCVDDFSSEEEAELE
HDDELAWDNYGGSGLVHHGWSPQVTNTETSSQEGGDLSDSELYKELSFDENVCKTEEKLP
EVDEVPDSREEGTASVATNESNKEYYKVTHSVSSQSEQDDDNEEEYDDNDEFDQDESSVS
KGDNVQSKRQLYDPNNPDQPIVMGKEKSRRDGDKYFIPNSGDNVYSPTLSKERMMSKVTP
TRPQRKKSPVKNYTRRNSPPRYFGNRYQEDHHWQEYESHSPVGSRNYHYSTENLSEDEDS
LVAQSRNTHHQSRLTALHDAERYESMLSNILSSPSFDSHEYNESLTRARNKLKILYEGMI
TNDIEAATNNNIEQKLWRNVYYQVIEILREQIRSCPEQDSSELKINLILLLDQGTAFYES
LLENLQHKNRFNLKEILNSASARKRHRTKAGKRSKLAILSCQRIFICLGDIARYREQADH
TSNYGRARHCYLQSQVLAPKNGRPYNQLAILAVKTRHKLDAVYYYIRSLAASNPILSARE
SLMVLFDEIRRKIDFIKQRDDTEAKKRSTSSKGKESSKVAKSRTNINEGSSRRWEEVWIL
PGSEDVSTKGVKAEKQSSSETDLPELRLSSQEMTKHFTLLFLNLHGKLFTRIGLENFGEN
LTKTLRIFEATKLMSNHRLLQLFAINLFAVLNAEKLSIHARAHDSSQNQHRALKFVFSMF
TIIVDQVNRTFKAGSGNEEFDPFASDDLANLLPSIKVMFDWMYANKSCWYPPPLDLSDKD
LNVWDSLAELCNWICNHSCTRPSIQIYSEYNEGLHEVFLPEDSELAGFSPLGQAFSDPRF
VESGILTPENKSYIQQSVRISLIRDFLEYLCGMEEPLLAFKQGNYVTVPQTRLRSWSDKS
AHDESFTSDYDIDDYTTTADNNDNLYHDSATNQQANNDGEELSELRKYRDSLQMTKERHE
RRQSQIKSSLESDEKLTLQICPKYLVPDTNCFIDYLKLIEKLVSCGKYKVATPLVVISEL
EGLATERKGDNDHAEHVFQSAKMAVKFINTIFSDNNSKFCALTRRGTELKSLRFRSEEST
NNHGNNDDFILESTQAYSQSIQEHDKSIKTLTDGIVHTSVVLLTNDRNLRLKCLLLRNVA
TKNIQDFCAWAKV
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgggaaacgtttggatgttataaaattagatgagaaaaaactttggaaatta
catgaaaaattaaaaaaattgcaagctaaagaaaacgaaacaacaacgcattctgataat
attaaaaaaccaattgagcgaaaatcaaaacctgtcaaatatcaagtttatcaacctgga
gtaacgagactttcgaatcgtaaacttgctgcaagttttgacagatctacagtagaaaat
tcatcacctgttgtcaaggaaacaccaaaaagtaaaaatgaaagtttgacgaattcaact
cctagagggaatgattcgataaatcataggaaagacagtaaattaacaccaaaaccaaat
tcaaataagaatgtgcgaggacgacgtactaattatcgaaatagggttagcagaaatcag
aaactcaaagaagagccagaagttgaagcagaagaaggattcttgactcgacataaaaga
agacagaaacagggagattgtgttgatgatttctcaagtgaagaagaagcagaattagaa
catgatgatgaactggcgtgggataattatggaggatctggattagttcatcatggatgg
agtccccaggtaacaaatacggaaacatctagtcaagaagggggagatttatcagattct
gaattatacaaagaattaagttttgatgaaaatgtttgtaaaacggaagaaaagttgccg
gaagtggatgaagtacctgactcaagggaggaaggtacagcatcagttgctacaaatgaa
tccaataaagaatattataaagtcactcattcagtctcatctcagtctgaacaagatgat
gacaatgaagaagaatatgatgacaatgatgaatttgatcaggatgagtcttcagtttct
aagggggataatgtgcagtcaaaaaggcagctttatgatccaaataaccctgatcaaccc
attgttatgggaaaagaaaaaagtagaagagatggtgacaaatactttatacccaattct
ggcgataatgtttatagtcctacactgagtaaagaaagaatgatgtctaaagttacgcct
actcgtccacagcgcaagaaatcaccagtgaaaaattatacaaggagaaattctccgcca
cgatactttggaaaccgctatcaggaagatcaccattggcaagaatatgaatctcacagt
ccagtaggaagtcgaaactatcactactccacagaaaatctgtcagaagatgaggatagc
ttggtcgcgcagtctcgtaacacgcatcatcaatccagactgacggcattacatgatgca
gaacgatatgaatcgatgctgtcgaatattctctcttcgccgtcatttgattcacatgaa
tataatgaaagtttgactagagctcgaaataaactgaaaattctttatgaaggaatgata
acaaatgatattgaagcagcaactaataataatattgagcaaaaactatggagaaatgtt
tattaccaggtgatagaaatactgagagaacagattcgttcatgcccagagcaagatagc
tcagaattgaaaatcaatttaattttattgttagaccaaggtactgcattctatgaatca
ctgcttgagaatcttcagcataaaaatagattcaatttgaaagaaatattgaacagtgca
tccgctcggaaaagacatagaacgaaagctggaaaaagatccaaacttgcgatactaagt
tgccaaaggattttcatttgtctcggtgatatagcaagatatagagagcaagctgatcac
actagcaattatggaagagcaagacattgctatctacaatctcaggttttagcaccaaaa
aatggtcgtccttacaaccaactcgcaattttagctgtgaaaacccgtcacaagttagat
gcagtttattattacatccgtagcttggcagcaagcaatcccatcttatcagcccgagaa
agcttgatggtactattcgatgaaattcgcagaaaaattgattttataaaacagagagat
gacacagaagcaaagaagcgatcgacgtcttcgaaaggaaaggagagttcaaaggtcgca
aaatctagaacgaatataaatgaagggtcgtcgagacgctgggaagaagtttggattctg
ccaggatctgaagatgtttcaacgaagggagttaaggcagaaaagcaatcatcatcagaa
acagatttacctgaactacgtctttcttctcaagagatgacaaaacactttactttgtta
tttttaaatctacatggaaaattatttactcgtatcggacttgagaatttcggggagaat
ttaacgaaaacattacggatatttgaggcaaccaaacttatgtctaatcatagactccta
cagttgtttgcaatcaatttatttgcagttttaaatgcagaaaaactttccattcatgca
agagcgcacgattcatcacaaaatcaacacagagcattgaagtttgttttttcaatgttt
acaatcattgttgatcaagttaacaggacatttaaagctggttcaggaaatgaagaattt
gatccatttgcatcagatgatcttgcaaatttgttgccttcaatcaaagtaatgtttgat
tggatgtatgcgaataaaagctgctggtatcctcctccactggatctatctgataaggat
ttgaatgtttgggacagtctggctgaattatgcaattggatttgtaaccattcctgtacc
agaccatctatacaaatttatagtgaatacaatgaaggtctacatgaagtattcttacca
gaagacagcgaactggctggattttcacctctaggacaagcattcagtgatcctcgtttt
gttgagtctggtattttgacaccagaaaacaaatcgtatattcaacaatctgttagaatc
agtttgattcgagatttcctggaatatttatgtggaatggaagaaccattactggcgttt
aaacaaggaaattatgtcactgttccacaaacgagattgaggtcttggtcagacaaatca
gctcatgatgaaagtttcacatctgattacgatattgacgattatacgacaactgcggat
aacaatgataatttatatcatgatagtgctacaaaccaacaggcaaataatgatggagaa
gaactgagtgaattgagaaaatacagggattcattgcagatgacaaaagaacgccatgaa
cgtcgtcagagccagataaaaagttccctcgaatcagatgaaaaattaactttgcaaatc
tgtccaaaatatcttgtacctgatactaattgttttatcgattatttgaaacttattgaa
aaattagtcagctgcggaaagtacaaagtcgctacaccactagttgtcattagcgagctt
gaaggccttgcaacggaacgaaaaggagataatgatcatgccgaacacgtttttcaaagt
gcgaaaatggcagtcaaatttataaacacaatcttttctgataacaattcaaagttttgt
gcattgacgcgtagagggacagaactgaaatctttaagattccgtagcgaggaatcaaca
aacaatcatggaaataatgatgattttatacttgaaagtactcaagcttattcgcaaagt
atacaagaacatgataagtctattaagactcttacagatggcattgtacacacaagtgtg
gtgcttttgacaaacgatagaaatttaagattgaaatgtttattattaaggaatgtagca
acgaaaaatattcaggatttttgtgcttgggcaaaagtttga
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integrated database retrieval system
