Styela clava (leathery sea squirt): 120329457
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Entry
120329457 CDS
T07291
Name
(RefSeq) short transient receptor potential channel 4-like isoform X1
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sclv01009
]
120329457
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sclv04040
]
120329457
Protein phosphatases and associated proteins [BR:
sclv01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120329457
Ion channels [BR:
sclv04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
120329457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ank_2
PKD_channel
YVC1_C
Ank
Ank_4
Ank_5
TRP_2
Transformer
Motif
Other DBs
NCBI-GeneID:
120329457
NCBI-ProteinID:
XP_039252029
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MNNQQKLRRDTAPGSAMMAMVVKMAQQAELPRESPTFTRLPNFRHTGPPGPPSPNAYNTQ
SLNLPSSSGTQRRSSFGLGSLFSTPLARRKNNSSPLSVDSVHPSPLSSKRFPIDAEDTPY
LSDEIRHRIKELSARTKLKQKGDPTRNTNNCASNKNQASTNNDPRTNAIPGGTSANSSRQ
SSNRDYSTNGVLTRTLTKMTSNDSNANRRMNTPRIIGQTNRRLPGVGNNSYSNDENPIFG
VSSVTIPHIEEEGYLNNYELNFLRYAAEGDLKEVKQIFEEQTYYLFHLDVNCVDSLDRTA
LSLALLNRHIDVVRFLLSDEVVGIELRDALFYAIECEFYEAIEMLLEKDSQTSVQIVPGT
TSPFEPGLTPIMLSANKNNYKILTMLYKFNHRLTVNDKEILDDSFDTYSWDAVMERLLHF
RARASPAFMLLMYNEKGMAWDPLNTAMDLFGELQMLAKREREVDEAYLQMAEQCETFALQ
LLQEVRSASELADLMRYDLDADPDEDDDPGETDRVIIRKREKMRNYLKPIEKAIKYKMKD
FVTSDNSQLALIYIQKGSLFRKLKGYKAFLAQVLLGLLFPFLSIGFLVAPDTKFGRLMRN
PTVKFACSVVSEVVFVIMLLANTILTQIRTSQQRDEIPPLLIIAYAWIIGKLVQELREMI
HQGLREYLSDVWNWNDMFTILLFTGYMVLRLLNKVMQDQAGVGNHFYWVPVVLDPVPLSD
VCISIAYILIHLRILELLRADRRFGPLQVSLDLMTRDAIRFLVIFFIIYLAFGSGITELY
APFGESKGCYCDMKKCNPKTMTTIATLTSDNSSTTSTIATGQMPEECIPCKDTNDEQEMV
ITTLQGIFTSMFWTLFGYSQVFKDNMGTDCPDNEYLFTEVVGTIIICMYHIIAIIVLVNM
LIAMMSNSFQKTHDDAEREWKFHRTQLWLKFIRNEINRPPPMNLIPRPKQIRQLANKLMK
KFQSCGRGEDTNTIEEDGRLQNQIRMQRRRTGFDSNQGRCLAGSWNEGETRYSKVLRLVV
IRYLKKKVLNSEMVI
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaccagcagaaattacggcgggacacagctcctggttcggccatgatggctatg
gtcgtaaaaatggctcaacaggcagagcttccacgagagtctccaacattcacaagatta
ccaaattttcgtcacaccggtccaccgggaccgccatctccaaatgcttacaatacgcaa
agcctcaatttaccgtcttcaagtggaacgcaacgtagatcatcatttggattaggaagt
ttgttttcgactccgttagcaagaagaaaaaataattcatcaccactgagtgtagattct
gttcaccctagtccgctgagttcgaagcgatttccaatcgacgcggaagacactccttat
ctgagcgatgagatacgacatcgcattaaagaactgagtgctcgaacaaaactcaaacaa
aaaggagatccaaccaggaataccaacaattgtgcatcaaataagaaccaagcaagtaca
aataacgatccaagaactaacgcaattcccggaggtacatcagcaaactccagtagacaa
agttctaatcgagactactctacgaacggcgttttgacaagaaccctaacaaaaatgacg
tctaacgacagcaacgccaatcgtcgcatgaacacgccacgaatcataggacaaacaaac
agaagattgccaggagttgggaataactcgtacagtaatgacgaaaaccctattttcggt
gtatcaagtgtcacaataccccatatagaggaagaaggttacttgaacaattacgagttg
aattttcttcgttatgcggcagagggtgatctcaaagaagtgaaacaaatttttgaagaa
cagacttattatttatttcatctagatgtaaattgcgtcgattctttggacagaactgca
ctcagtcttgctttattaaacagacatattgatgtcgtcaggtttctgttgagtgatgaa
gtagtggggatcgaactacgagatgcattgttttatgcaattgagtgtgagttttacgaa
gctatagaaatgttgcttgaaaaagattctcaaacttccgtacaaattgttccgggtaca
acgtcaccgtttgaacccggcttgaccccgatcatgctttcggcaaacaaaaacaactac
aaaattttgacaatgttatacaaatttaatcatcgactaaccgttaacgacaaagaaatt
ttggacgattcgttcgatacttattcatgggatgccgttatggaaagattacttcacttt
cgagccagagcgagtccagcgttcatgctgttaatgtacaatgagaaaggaatggcgtgg
gatcctttgaacacagccatggatttgttcggagaattacaaatgctggcaaagagggag
agagaagtcgatgaagcttatttacaaatggccgaacaatgcgaaacatttgctttgcaa
cttttgcaggaagtcagatctgccagtgaattagctgatctcatgagatacgatcttgac
gccgatccagatgaagacgatgatcctggcgaaacggatcgtgttataataagaaaacgg
gaaaaaatgagaaattacctcaagcccattgaaaaggcaatcaagtataaaatgaaagac
tttgtgacgtcagataattcacaattagctcttatttatattcaaaaaggaagtttattt
cgaaaactcaaaggttacaaagcatttctcgcacaggttctgctcggcttattgtttcct
tttctctccattggatttctcgtcgctccggacacaaaatttggtcgtttgatgcgaaat
ccaactgtaaaatttgcgtgttctgtggtctcagaagttgtcttcgtaataatgttactt
gccaatacgatattgacgcaaatacgaacgtctcagcaacgtgacgagatacctccgtta
ttaattatagcatatgcatggattataggaaaattagttcaagagttgcgagagatgatc
caccagggtcttcgagaatatctctcagatgtttggaattggaatgatatgtttactata
ttattattcactggttatatggtgctacgccttttgaacaaagtcatgcaagatcaagcc
ggtgtaggtaatcatttctactgggttccagtcgtgctcgacccagtcccgctatcagat
gtatgtatatcaattgcctacattctcatacatctcagaattttagaattattgagggct
gacagaagattcggaccactgcaggtatctctggatttgatgacgagagatgcgattcga
tttcttgtgattttcttcattatttatcttgcattcggaagtggaattacagagctatac
gctccgtttggagagtcgaagggttgttactgtgacatgaaaaagtgtaatcctaaaacg
atgacaacaattgcaaccctgacctcagataattcgtcaacgacatcaactatagcaaca
ggacaaatgcccgaggaatgtataccatgcaaagatacgaatgacgaacaagagatggta
ataacaacgttacaaggaatatttacttcgatgttttggactttgttcggatattcgcaa
gtttttaaggacaacatgggaactgattgccctgacaatgaatatcttttcactgaagtg
gtgggaacaattatcatatgtatgtatcacattattgccatcatagtattggtgaatatg
ttgatcgctatgatgagcaacagcttccagaaaactcacgacgatgcggagagagaatgg
aagtttcatcggacgcaactttggttaaaattcattcgaaatgaaatcaatcggcctcca
cccatgaatttaattccacgaccaaaacaaatacgacaattggcaaataaattgatgaaa
aagttccaatcttgtggacgaggggaagacacaaatactatcgaagaagatggaagatta
cagaatcaaatacgaatgcaacgtcgtcgcaccggatttgactccaatcaaggccggtgc
ttggctggttcgtggaatgaaggagaaactcgatattctaaagttcttagactcgttgtt
atccggtatctgaaaaagaaagtacttaacagcgaaatggttatatga
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