Styela clava (leathery sea squirt): 120330132
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Entry
120330132 CDS
T07291
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03018
RNA degradation
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120330132
09123 Folding, sorting and degradation
03018 RNA degradation
120330132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120330132
03041 Spliceosome [BR:
sclv03041
]
120330132
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120330132
mRNA degradation factors
5'-3' decay
Lsm complex
120330132
Spliceosome [BR:
sclv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120330132
Complex C
U2 snRNP components
120330132
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
DUF150_C
Peptidase_M16_M
AceK_regulatory
Motif
Other DBs
NCBI-GeneID:
120330132
NCBI-ProteinID:
XP_039252907
LinkDB
All DBs
Position
Unknown
AA seq
104 aa
AA seq
DB search
MADDEQPPPPVTQTVEEPLDLIRLSLDERVYVKMRNERELRGRLHAYDQHLNMVLGEVEE
TVTAVEIDEETYEEIYKQTKRNIPMLFVRGDGVILVSPPLRGMA
NT seq
315 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgatgagcagccgccaccaccagtcacacagacagtagaagagcctcttgat
ctgattcgattgagtttagacgaaagggtttatgtaaaaatgcgaaacgaacgagaactt
cgtggtcgactacatgcatacgatcaacatcttaacatggttctcggagaagtagaagaa
accgtgacagcagttgaaatagatgaagaaacttatgaagaaatttataaacaaactaaa
agaaacattccaatgttgtttgtgcgtggtgatggagtaatcctggtgtcgccacctctt
cgaggaatggcatga
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