Styela clava (leathery sea squirt): 120330735
Help
Entry
120330735 CDS
T07291
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sclv03036
]
120330735
03400 DNA repair and recombination proteins [BR:
sclv03400
]
120330735
Chromosome and associated proteins [BR:
sclv03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120330735
DNA repair and recombination proteins [BR:
sclv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
120330735
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_2nd
Ig_SMCHD1_6th
Ig_SMCHD1_5th
Ig_SMCHD1_4th
HATPase_c_3
Ig_SMCHD1_7th
SMC_hinge
HATPase_c
Motif
Other DBs
NCBI-GeneID:
120330735
NCBI-ProteinID:
XP_039253573
LinkDB
All DBs
Position
Unknown
AA seq
2000 aa
AA seq
DB search
MASDDAYVYVYDRRSSTSEGKTITIGGVFGFSEFRDKILQTFNLQPDDEFVITTTNRNVI
ADDEDYVNLIESADTLYILKSVVQPLAAPVAEKIEFQPHYDTLIKSGIYEYYASEGHINP
LPFAFAELIDNALAATVDNKGSRNIELSLHFDDSNAGNHAVCVTDNGVGMTSRQLNNWAI
YRLSKFNRTERHPRTNLFEDALMADDERQMLTKHNEPKSLNSDISWFGVGGKQAIFFIGS
STRIITRPKGSCDVHEFTLSKDEFKRKEANKETIYSGYIRNRPPCDYSHIPKNEEITKKL
INSENSIDWKKNGFTNVVITGIDSKHVKFMKQDFGLWTRQLAHIYHYYIHGPEGNTKMSK
ERRNVGALDVNITISIHERGKPTATVNLHDINDDLESQYIRTAFDTFEFKVKTDGGSGIV
EGSIRYHPFLYDKETFPSDPYTEVFPNSSVDVDGNDDIDDVPARGRRPIFECFWNGRLIP
YTFIDDFDWCRLPKKRGNIPNDCFYRISGCLFTNDKFKVSTNKLTFIDLEGKLRDRSTVF
SRVILGQEQRAQIHRQFMEWLKECHEKHDKQIKFLNFVETSTRYDTSGRKNSQLQHSVYT
TIEWDGKSFKQGQLVRTHRTTPIISGRIKQFILSGTYEGDVYAVGGEVEIQQEPFALYNE
IRRFPLSKLDREVSSATVAHLINEEEGKLPEHLHLTWPEGNEIVDGESRQSGVTIGAMRI
EIRNRRKESIQKLPSNAGSRKLLLEQRLLYETNDGGKIREITSHVTTHAKTWPYWFKKME
NIKALGTYTIQLRTMLNESGVYTYADGCILPQKELKFIIREAPPSRFLVGMLESPLRIGE
PFDIPLELQDEHGHPTAASDEFKPVLNSEGLQLSYADIGSRQNTLIIKGVVAIGTVNSQH
GKNFIMTVILPTMKRELQSMKVRLLPGQPHALLIDDRNDDKDVDDDSDEIKCFDIENLSS
ISLRVHVVDVAGNVTLGQKLIVQAKFPSNSGVPALTCDCSESGRGTLSGRIAMKKLKKEK
KSIKVKIEVVGNKDIKPCFCQFNVSPSTNVKVIEVFYTDPYSDDSDLIKLKMGSDIYWQA
GEIMSDMSFRLLDEARREVVLNKNVCSGIRVNWTNHVSSEDLCSGKLPDITIPTNVRDTK
YCEIIYAGQKNIDFSFNIKPIAGEPAAIKCTVVGSRDIQLGITKNDPITVSLLDSHGNKL
NVRESQLDLVRVSAEGLDETLIEKNIENNTVHLNNIQFNQGPLGSREICVMYGHSEPITE
YVLLQIIAGTPVMIDISGWSDFSKPVAVLSGTRIQEEIKVQLLDGWGNAARQKGVKVLLG
KDSAVKLTPNPGMLLTDKDGVAVFKKFSVSGKRGEYNLQPRVVVNRTSIEGPKLKISILP
NTETPTCIKVFYDQSIKSVVTGTTWPDFEVNVQSEEGMPVTSSVHICMAVWKGKPLRDKS
VPLSAEFHRINEPSQGVQNFNSYRAPTIASSYSICFCLCDSPNSRNFLMVSEIIKINVVP
GPPYRLQHEVDPGTPTVSNTKVARTIIRNLTLVLEDKFGNSTGHDVNGQVTVIIETSEQT
LKSAEVPKFDGNCARLEMPMKNGKIVMNNLTLQENSPGTDGSQYVLHCELTSKQLPEQLP
PYMLKFFFYNDSFKQTQMSVLAKKRDVLKNAINSYESLFNLHHTLLNELKKTFKDADNKK
KQLLRDLQRANMKTKEISSTADVESLIRKFSCERDFMLNQPRRKCLLKEYPDKSTEVLGK
IGHLAQVSDDAIACVLSWHMMGDMDCLVTFTSKKAREVHKATGGTQQLLPLDSIYKKNLP
DPNRPLPHLRRPPSAGGFSNAKGNPVYARDLLYFPKDPDNCKIVFGMLLGETLIIDDLDT
ANEYRNKVVKFTYCPTILTRNGERIRSNGKFGGNQNKAVSIDRLRGAVFGAMLPEECSEI
EKQIELLRKYKESLDETDTAFTELNNHESSLQTDEMIQKKHEHKEAIERLKEIEKKIGLT
RSSAPRQKMDSGTPSKRRRR
NT seq
6003 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgatgatgcatatgtttatgtttacgatcgtagatcgtctacatctgaagga
aagacaattaccattggaggtgtctttggcttttctgagtttcgtgataaaattcttcag
accttcaatctccaacctgatgatgaatttgttattacaacaacaaatagaaatgttatt
gcagatgatgaagactatgtgaatctgattgaatccgcagataccttgtatatactcaaa
tcagttgtgcaacctctggctgcaccagttgctgagaaaatagaatttcagcctcattat
gacacattgattaaaagtggaatatatgagtattatgccagtgaaggacacattaaccct
cttccatttgcatttgctgaactgattgataatgctcttgctgcaactgttgacaataaa
ggatcacgaaatattgaactgagtttgcattttgatgacagcaatgcaggtaatcatgct
gtttgcgtcacagataatggagttggaatgacttcacgtcagttgaacaactgggcaatc
tacagactttcaaaattcaatagaacggagagacatcccagaacaaatttgtttgaagat
gcattgatggcagatgatgaaagacaaatgctgactaagcacaatgagccgaaatcactc
aatagtgatatttcgtggtttggagttggaggaaaacaagcaatattttttattggaagt
tcaacaaggataattactcgtccaaaaggatcttgcgatgttcacgaatttacattatcc
aaagatgaattcaagcgcaaagaagcaaataaagaaacaatatacagcgggtatataaga
aacaggccgccgtgtgattattctcacatacccaaaaatgaagagattacaaaaaaatta
attaattctgagaattcgattgattggaagaaaaatgggttcaccaatgttgtcatcaca
ggcattgattcaaaacatgtcaaatttatgaagcaagactttggactttggacaaggcag
ttggcacacatatatcactactatattcatggacctgaaggaaacacaaaaatgtctaag
gaaagaagaaatgttggtgcattagatgtcaatattacgatatccattcatgaacgaggt
aagccaacagccacagttaatctacatgacataaacgatgatctggaatctcagtatatt
cgtactgcattcgatacattcgaatttaaagtgaagactgatgggggtagcgggattgtg
gaaggaagcataagatatcatccgtttttgtatgataaagagacgtttcctagtgatcca
tacacagaagtatttcctaattcatcagtagacgtagatggcaatgatgatatagatgat
gtaccagccagaggcagaagaccaatatttgagtgtttttggaacggtcggctgatacct
tacacatttatcgatgattttgactggtgcagacttccaaagaaacgtggaaatattcca
aatgattgcttttacagaatatctggttgcctttttacaaatgacaaatttaaggtttct
acaaacaaacttacttttattgatttggaaggaaaacttcgggatcgttcaacagttttc
tcaagagttattctcgggcaagaacaaagagcacagattcatagacaatttatggaatgg
ctaaaagaatgtcatgagaaacatgataaacagatcaagtttctaaatttcgttgaaacg
tcaacacgttatgatactagtggaagaaaaaatagtcaactgcagcactctgtatacact
actattgaatgggatggcaaatcattcaagcaagggcagttggtacggacacatcgcaca
acaccaatcatctctggtcgaatcaaacaatttattttgagtggaacttatgaaggtgat
gtttatgcagttggtggtgaagtagaaatacagcaggaaccctttgcactgtacaatgaa
attcgaagatttccgctttcgaaattagatcgagaagtatcaagcgccactgttgctcac
ttgattaatgaggaagaagggaaattaccagaacaccttcatctaacatggccagaggga
aatgaaattgtagatggtgaatctcgacagtctggtgtcacaattggtgcaatgcgaatt
gaaattcgtaacagacgcaaagaatcaatacaaaaattaccatcaaatgctggtagtcgt
aaacttttattagaacaacgattattatatgaaacaaatgatggaggaaaaattcgtgag
attacaagccatgttacaacacatgctaaaacatggccatactggttcaagaaaatggaa
aacataaaagcattgggaacttacacgattcagctacgaacaatgttaaatgaaagtggt
gtttacacgtatgcagacggctgtattttgcctcaaaaagaattgaaatttataataaga
gaggctcccccaagcagatttcttgtcggaatgttggagtctccactcagaataggagaa
ccgtttgatattcctttagaacttcaagatgaacacggacatccgacagctgcatcagat
gaatttaaaccagttcttaattctgagggtcttcagttgtcatatgcagacattgggtca
agacaaaatacacttattatcaaaggtgttgtagcaatcggtactgtaaactcacaacat
ggaaaaaattttattatgactgtcattctgcccacaatgaagagagaattgcagtcaatg
aaagttcgattgttacctggtcaaccacatgctttgcttattgatgatagaaatgatgac
aaagatgttgacgatgattcagatgaaataaaatgctttgatattgaaaatctttccagc
atttctcttcgagtgcacgtcgttgatgttgccggaaatgtaactctgggacaaaagttg
atcgtacaggccaagtttccttcaaattctggtgttcctgcacttacatgtgattgttca
gaaagtgggcgaggaactttatcgggtcgaattgcaatgaagaaattgaaaaaagaaaag
aaatcgataaaagttaagatcgaggtagtcggaaataaagatataaaaccttgtttttgt
caattcaatgtatcaccttctacgaatgtcaaagtgattgaagttttttatacagatcca
tattcggatgattcagatttaatcaagcttaaaatgggttccgatatttactggcaagct
ggagaaataatgtccgacatgagttttcgactactggatgaagcaagacgagaggttgtt
ctgaacaaaaacgtttgttctggaatcagggtcaactggacaaatcatgtatcatcagaa
gatttatgttctggaaagctacctgatataactattcctacaaatgtcagggatacgaaa
tattgcgaaatcatttatgctggacagaaaaatattgatttttcattcaatataaagcca
attgcaggcgaaccagctgctataaagtgcacagtggtcggatctcgtgatattcaactt
ggaattacgaaaaatgatcctattactgtgtcactgttggacagtcatggcaacaaactt
aacgtcagagaaagtcagttagatcttgttcgagtatctgcagaagggctggatgaaacg
ctgattgagaagaatatagagaacaacactgtccacctgaacaatattcaattcaatcaa
ggaccacttggtagtcgagaaatatgtgttatgtatgggcatagtgaaccaataacagaa
tatgtacttctacaaataattgctggaactcctgtcatgattgatatttctggctggtct
gatttctcgaagcctgtagctgtgctaagtggaactcgtatccaggaagaaattaaagta
caactcctcgatggatggggtaatgcagctcgacaaaaaggtgtcaaagttctgcttggc
aaagattctgctgtcaaactgactcctaatccagggatgttgttaactgataaagatgga
gttgctgtgtttaaaaagttttctgtttctggaaaaagaggagaatataatttacagcca
cgtgttgttgtgaacagaacttcaatagagggacctaaattgaagattagtattttacca
aacactgaaacaccgacatgtattaaagtattttatgatcaatcaataaagtcagttgtt
actggaacaacatggccagattttgaagttaacgtgcaatcagaagaaggcatgcctgta
acgtcaagtgtccacatatgcatggctgtatggaaaggaaaaccattgagagataaatct
gtgcctttatcggcggagtttcataggatcaatgaaccatcacaaggtgtccaaaatttc
aacagttatcgagcgccgactattgcatcaagctacagtatctgtttttgtttgtgtgac
agtcccaactcaagaaattttctgatggtcagcgaaattataaagattaatgttgtacct
ggtcctccttatagactccagcatgaagttgatccaggaacacccacagtttctaacaca
aaagtggccagaacgattatcagaaatcttacgctcgtgttagaagacaagtttggcaat
agcacaggtcatgacgtcaatggccaggtgactgtcatcattgaaacatctgaacaaact
cttaaatcggcagaggttccgaagtttgatggaaactgtgcaagactggaaatgccaatg
aaaaatggaaagattgtgatgaacaatttaacgttgcaagaaaattcacctggaacagat
ggatcacaatatgttcttcattgtgaattgacatctaaacaattaccagagcaattgcca
ccatacatgctcaaatttttcttctataatgatagttttaaacaaactcaaatgagtgta
cttgccaagaaaagagatgtgttaaagaacgcaatcaattcatatgaaagtctttttaat
ctacatcacactctcttgaatgaactgaagaaaacttttaaagatgccgataataaaaag
aagcagctgttacgagatttgcaaagagctaatatgaagacaaaagagatttcatcaact
gctgatgtagaatccttaatcagaaaattttcttgtgaacgtgatttcatgttaaatcaa
cctcgacggaaatgcttgctcaaggaatatccagacaaaagtacagaggttttgggaaaa
attggacatctggctcaagtctcagatgatgcaattgcatgtgttttgtcttggcatatg
atgggagatatggactgtctagttacatttacgtctaagaaggctcgagaagtgcacaag
gcaacgggaggtacccaacagctgttgcctctcgacagtatttataagaaaaatcttccg
gatccaaacagacctttgcctcatctgaggagaccaccttctgctggtgggttttccaat
gcaaaaggaaaccctgtctatgccagagaccttctctactttccaaaagatccagataat
tgcaagatagtttttggaatgttacttggagaaacgctgatcattgacgacttggataca
gctaatgaatacagaaacaaggttgttaaattcacctactgtccaactattctgacaaga
aatggagaacgaatcagaagcaatggaaagtttggtggcaatcaaaataaagcagttagc
attgatagattacgtggagctgtatttggtgcaatgttgcctgaagaatgcagcgaaatc
gaaaaacagatcgaactgttgcgaaagtataaagaaagtctcgatgaaacagatacagca
ttcaccgaactaaacaatcatgaatcatcattacaaactgatgaaatgatacagaaaaaa
catgagcacaaggaggcaatagagagactgaaggaaattgaaaaaaagattggtctcact
cgcagttctgccccaagacaaaaaatggattctggaactccaagcaaaagaagacgacgt
tga
DBGET
integrated database retrieval system
