Styela clava (leathery sea squirt): 120332120
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Entry
120332120 CDS
T07291
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120332120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sclv03041
]
120332120
Spliceosome [BR:
sclv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120332120
Complex C
U5 SnRNP specific factors
120332120
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
120332120
NCBI-ProteinID:
XP_039255235
LinkDB
All DBs
Position
Unknown
AA seq
981 aa
AA seq
DB search
MDTEMYDEFGNYIGPELDSDEEEEDEEVDNDMSPSHDLDRQEDDDDNDVDMDDSGIAKTG
MEVVLHEDKKYYPTHEEVYGEEVETIVQEEDAQPLTEPIIAPIRRKKFALMVQDLPNTTY
DMEYLADLMDSPELIRNVVIAGHLHHGKTNFVDCLIEQTHPDIAKKEAKDLRFTDTLLTE
QERGLSIKSQPVTLVLPDTRGKNYLINVMDSPGHVNFSDEVTAAMRLSDGVVLFVDASEG
VMLNTEQLLKHAVQERLAITLCINKIDRLMLELKLPPTDAYYKLRHIVDEVNSLLSTYSD
EEDTPLISPLLGNVCFASAQYSCCFTLQSFSKIYADHYGGGLDYKAFAKRLWGDAYFNQK
TRRFYKKPPHTNAQRSFVEFILEPLYKIFAQVVGDVDSTLPRVLEEINVHVTKEELKQNI
RPLLRLVCSRFLGSFTGFVDMCVDHIPSPEQGARRKVEHTYTGPLDDSELAQSMLKCDPD
GPLMVHTCKMYSTEDGVSFRVFGRVLSGTVHSNEQVKVLGENYSLEDEEDSRVVTVGRLW
ISEARYTVEVNRVPVGNWVLMEGVDEPIVKTSTITQARGNEEAQIFRPLKFCTSSVVKIA
VEPVNPSELPKMLDGLRKVNKSYPLITTKVEESGEHVVLGTGELYLDCVMHDLRKMYAEI
DIKVADPVVAFCETVVETSSLKCFAETPNRKNKLTMIAEPLEKGLAEDIENEVVQIGWNR
KRLGEFFQTKYDWDLLAARSIWAFGPDNTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQ
WGTREGPLCDEPIRNVKFKILDAVIASDPLHRGGGQVIPTARRVAYSAFLMATPRLMEPY
MFVEVIAPADCVSAVYTVLARRRGHVTQDAPVPGSPLYTIKAFLPAIDSFGFETDLRTHT
QGQTFCLSLFHHWQIVPGDPLDKNIVIRPLEPQPATHLAREFMVKTRRRKGLSEDVSISK
FFDDPMLLELARQDVMFNYPI
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggatacagaaatgtacgatgagtttgggaattatatcggacctgagttggattccgat
gaagaggaagaagatgaggaggtagacaatgatatgtcaccatcacatgaccttgatcgg
caagaagatgacgatgataatgatgttgatatggatgacagtggaattgcaaaaactggg
atggaagttgttttacatgaagacaaaaaatattatccaacccatgaagaagtttacggg
gaagaagtcgagacaatagtgcaagaggaagatgcacagccactgactgaaccgataatt
gctccgataagaaggaagaagttcgcactcatggttcaagatctacctaacactacatat
gatatggaatatcttgctgatcttatggactcaccagaacttataagaaatgttgttatt
gcaggacatttgcaccatggaaagacaaattttgtcgattgtctgatcgaacaaactcat
ccagatattgcaaagaaagaagctaaagacttgagatttaccgacacattattgactgaa
caagaacgtggattaagcattaaatcacaacctgttactctggtattgcctgatacaaga
ggcaaaaattatcttatcaatgttatggattctccaggtcatgtcaacttttcagatgag
gtaacggctgcaatgcgtctgagtgacggtgtagttctattcgttgatgcatctgaaggt
gtgatgttgaatacggaacagttattgaagcatgcagtgcaggaacgacttgcaatcact
ctctgcatcaacaaaattgacagattgatgttggaattgaaacttccacccactgatgct
tattataagctcagacatattgttgatgaagtcaattctttgctaagcacatacagtgat
gaagaggataccccgttaatttctccgctacttggaaatgtctgtttcgccagtgctcaa
tattcttgttgttttacgctgcagtcgttttcaaaaatctatgccgatcattatggtgga
ggtttggattataaggcttttgcaaaacgattgtggggtgatgcttacttcaatcagaaa
acgcgaagattttacaagaaacctcctcataccaatgctcaaagaagctttgtcgaattc
atattagaacctttatacaagatatttgcacaggtagttggagatgttgatagcacatta
cctcgtgtattggaagaaattaatgttcacgtaacaaaggaagaattgaagcaaaatatt
cgtcctctattaagactggtttgctccaggttccttggcagctttactggatttgttgac
atgtgtgtcgatcacattccatcaccagaacagggtgcaagacgtaaagttgaacatact
tacactggtccattagatgactcagaacttgctcagtcaatgttgaagtgtgatcctgat
ggtcctctgatggttcacacttgcaaaatgtactcaactgaggacggagtgagtttccga
gtgtttggacgagtattgagtgggactgtacattctaatgaacaagttaaagttctcgga
gaaaattacagtctcgaagacgaagaagattcaagggttgttacggtcggccgactctgg
atatctgaagctaggtacacagtggaagtgaatcgtgttccagtcggtaattgggtattg
atggaaggagtggatgaaccgattgtaaaaactagtacaatcacccaagctcgaggaaat
gaggaagctcaaattttcagacctctgaagttctgcacaagctctgtagtaaaaattgca
gtggaaccagtcaatccttcagaacttcctaaaatgttggatggtttgagaaaagttaac
aaaagttatccgttaattacaacaaaggtagaggaatcaggtgaacatgttgttcttgga
accggtgaattatatctcgattgtgtgatgcatgatttacgaaaaatgtacgctgaaatt
gacatcaaagttgctgatcctgttgttgcattctgtgaaactgtcgtcgaaacatcgtca
ttaaaatgttttgctgaaactccaaacagaaagaacaagttgacaatgattgcagaacca
ctcgagaaaggtttggctgaagatatcgaaaacgaagtcgtacaaattggatggaacagg
aaaagactcggagaattttttcaaactaaatacgattgggatttacttgctgctcgttct
atatgggcgttcggacctgataatacaggtcccaacatcctagttgatgacactctacca
tctgaagttgacaaagcattactgggatcagtgaaagatagcattgtgcaaggattccaa
tggggaacaagagaaggacctctgtgtgatgaaccaatccgaaacgtcaagttcaaaatt
cttgatgccgtgatcgcatcagatccgttacatagaggcggaggacaagttataccgact
gcacgacgtgtggcatattctgctttccttatggcaacaccgagattaatggaaccatac
atgttcgtggaagtcattgctcctgctgattgtgtttctgctgtttatactgtacttgca
agaagaaggggtcatgtgacacaagatgctccagtaccagggtcaccattatatacaatc
aaagcattccttcctgctatcgattcatttggatttgaaactgacctgagaactcacacg
cagggacaaactttttgtttatcattattccatcactggcagatcgtacctggtgatcct
ctcgacaaaaacatagttattcgacccctggaaccacaacctgccactcatctcgcacga
gagttcatggtaaaaacaaggaggagaaaaggactgagtgaggatgtctcgatcagcaaa
tttttcgacgatcctatgttgttagaattggctaggcaggatgtcatgttcaactatccc
atctag
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