Styela clava (leathery sea squirt): 120333900
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Entry
120333900 CDS
T07291
Name
(RefSeq) TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv04120
Ubiquitin mediated proteolysis
sclv04140
Autophagy - animal
sclv04144
Endocytosis
sclv04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120333900
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120333900
04140 Autophagy - animal
120333900
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
120333900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sclv04131
]
120333900
04121 Ubiquitin system [BR:
sclv04121
]
120333900
Enzymes [BR:
sclv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120333900
Membrane trafficking [BR:
sclv04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
120333900
Ubiquitin system [BR:
sclv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
120333900
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_2
TRAF3_RING
RING_XB3-XBAT31
zf-RING_5
MATH
TRAF6_Z2
ADK_lid
Spc29
zf-rbx1
Crescentin
MAAL_C
Motif
Other DBs
NCBI-GeneID:
120333900
NCBI-ProteinID:
XP_039257229
LinkDB
All DBs
Position
Unknown
AA seq
580 aa
AA seq
DB search
MLSSTNGAVDHSVKGSVSTMNDNSELLELGGYDYEFVPSLDNKHMCPICFNALREPVQTE
CGHRFCHTCILRSVARFKKCPVDNVPLLPSQLFQDKCALREVLDLRAKCNNKGCDHVCEL
RLMETQHKEICVMRKYPCKNNCGLSLLKQDAIYHEENQCPRRPVTCDVCGQTYPLATEEA
HREDCKQHLPVNCPHCSHELKQYKLQYHITTECMKAPIKCVFSKVGCERELPRHDIQQHM
EKSTQIHLQYLLNNISSITKDGAELSAMLKSLTSRITRLEKDDYPYDTNDSHIEIYGRDD
DGVSNGPGNMPGLRSRVPHQSSPRDADEVDEIALIKEFNHMMENNHSAVSEAGPSHVPLR
SESLLREESMIGKDAEKKIISLDHHVRELKAKMDTQITSVKELTSKMTYMEQRLQQQELR
LCNGLYYWKIKDYSRLRAAAAAGEVTVLHSPGFYTSPHGYRICVRVNLDGVETAQGTHLS
LFVHLMKGDNDDLLSWPFSGVITLTVMNQMDRPQDRSHISETLQAKTNLMAFQRPVSERN
QKGYGYIDFFPLKMIESEGFIKNDTLIIKAQVRVDAPISN
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgttgtcaagtacaaatggtgctgttgatcacagtgtaaaaggttcagtttcaaccatg
aatgacaattcggaattattggaacttggaggttatgactatgaatttgttccaagtctc
gacaacaaacacatgtgtccaatttgtttcaatgctctacgagagcctgtacaaacagag
tgtggacacagattctgtcatacttgtatactacgatcagtagcgcgttttaaaaagtgc
ccagttgacaatgtccctctgctgccaagtcaattattccaagacaaatgtgcactgaga
gaagttttagatttgagggcaaaatgtaacaataagggatgtgaccatgtttgcgaactt
cgtttaatggagactcaacataaagaaatttgtgtgatgcgaaaatatccatgcaaaaat
aattgcgggttaagtttattaaagcaagatgcgatttatcatgaagagaaccagtgtcca
agaaggccagttacttgtgatgtttgcggacagacttacccattggccactgaagaggct
cacagagaagactgtaaacaacatctgcctgttaattgtcctcactgttcacacgagctc
aaacaatacaagttacaatatcatatcacaacagaatgtatgaaggcaccgataaaatgt
gttttttcaaaagttggctgcgaaagagagcttcctcgtcacgatattcagcaacacatg
gagaaatcgactcaaattcatcttcaatatttactcaacaatatttccagcataactaag
gatggtgcggaattgtcagcaatgttaaaatcattaacttcaagaattacaagactggaa
aaagatgattacccatatgatacaaatgacagccatattgagatatacggaagagatgat
gatggtgtatctaatggacctggcaatatgcctggcctacgatctcgagttcctcaccag
agttcaccccgagatgcagatgaagttgatgaaatagctttaataaaagaattcaaccat
atgatggagaataaccattctgcagtgtcagaagcagggccttctcatgtgccacttcga
agcgaatcattattacgagaagaatcaatgattggaaaagacgcagaaaaaaaaataata
agtcttgaccatcatgtccgagaattaaaagcaaaaatggacacacaaataacaagtgtt
aaagaactaacttcaaaaatgacttacatggagcaaagattacagcagcaagaattgaga
ttatgcaatggattatattattggaaaattaaggattatagtagactcagagcagcagct
gcagctggagaagtcactgtattacacagtcctggtttttacacaagtcctcacggatat
cgtatctgtgttcgagttaatcttgatggtgtagagacagcacaaggaactcatctatct
ttatttgttcatttaatgaaaggagataatgatgatcttttatcatggccattttcaggg
gtgataactttgactgttatgaatcagatggatcgaccgcaagaccgttctcatatatca
gaaacattacaagcaaagaccaacttaatggcgttccaacgtcctgtcagtgaacgaaac
caaaaaggatatggatatattgacttttttccactcaaaatgatcgaaagtgagggattt
attaaaaacgatactcttattatcaaggcacaagttagagttgatgccccaatttccaac
taa
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integrated database retrieval system
