Styela clava (leathery sea squirt): 120339619
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Entry
120339619 CDS
T07291
Name
(RefSeq) agrin-like isoform X1
KO
K06254
agrin
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv04512
ECM-receptor interaction
sclv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120339619
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120339619
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sclv00535
]
120339619
Proteoglycans [BR:
sclv00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
120339619
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Kazal_2
Kazal_1
NtA
EGF_laminin
Kazal_CFAI
EGF
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
120339619
NCBI-ProteinID:
XP_039263716
LinkDB
All DBs
Position
Unknown
AA seq
2085 aa
AA seq
DB search
MSIEIQKRFTMSRNRYTSKSLFLVICLGLLFWFDITDGRRIKRSVMMGMNDNIQCISGTI
TERNSSTSIILTGTVIECDKMRPDKYNCRIQVWRFMKGRKIAGELVKIHEEKIMKTTYTK
SYVEIFGLGNPAFCDSEVKEDKTKIFFLNRVDDRLVLAASLLHITLKNLENTENVIKGMK
IEEEPKKKQDPCLMVLCGFEAKCEASANGSATCVCPKVTCGKSPDSSDIFAPVCGSDGVT
YSSECRLKASECWSQRRIRIVSRRPCTPVQETDPCKGVTCGNMAKCVVVDGMGKCQCYSC
DNAMTKPVCGSDQKSYRSECDLRRAACEHSQSLKVLRRAPCDPCEVYNEKNKSFEPLCEG
SCSLDVEGNPQCCDSIECEPSSEEMMVCGSDGRTYMSKCALQKYSCKIGRDISQVSLGSC
PSPRETTIVQGSTSIAADEKCPGNCDESSPDFIAFKSSFEENVNKILERKNKANSDAGSV
TNFKIEEVRRGSAVLVYSAMMTWSDMPIGEDFVPGLDTLWAFERLHDPAVGALKEAIISM
HVTLVLYKKPGDDFMVQEVCGMLQCEHGASCMVTEDNAGGLEHSCDCSAIGNAERLPVTL
GCKLANNNRFYDNKVAVRQASCMLRSFFTFRDICRVPPKNPCDDISCDGDGSMCIITNGV
ASCDCVTCSETFEPVCGSNEQTYRSMCHLNRENCIRGTSVTVASNGMCASQCDEVDCRHG
GQCEELLRGSALCICPSSCIEVYSPVCGSDGITYENECRLSIAACNKKMDISVLKMMPCN
GTESIKPPTEEVEEGSGEEGSGEDDCHCKFGATCDETIDDEDRSCVCDIKCDRIGSWVCG
SDGKTYTDECELLKTQCEMQKLIKIASQGRCADLCSKSVFGCCDDGITPAKGSRKAGCPE
TCKCNEHGSFSPLCNHTTGQCVCRPGVGGQKCDQCQPGFWNFRAIAEKRSIGCMDCRCEK
GGSVRDDCDQMTGQCVCKEGITGVKCSKCENGELVTDEGCVGAHGRETAGSCGELNCRFG
QECVARSAESGLYMCQCPPLSSCDTYANGKICASNGITYADECQMVVVACRESIVLTVIS
DGTCSEYFKSKRPVVPPIVTPASTTAQPATTTTTSTASTTMSTTTASTTSKSTTTSLTTP
GISTDMNKVTDSTTTITTTMTSTMAVKTPDPDFDIDGSGDGGENTDGNTTIDDEDDNENE
SSGDETDDIFPTGHTDAHNLVTPESMRSYQVETKLKFPNNTEPINMDDLLKDPEEYGETI
TSVFTRLGLVIAGLPGSSPIALTSLTNAAIKQINTEGIVVTFQIDVSDKSDLKELQNFIN
ANLDDGESFMFIDSGYQPREFYNDESADVLKTEILTNPVKKSVSVRPVVPPLTNLIYMED
DEWSVPQFGGSSYMEFKKMSAYSAATIHMTFKSVDSEGLLLYNGQNTGRDFISLAIIGGY
VEFRFDTGSGPLSLRSNIQVNDGQWHEVVSRRNRREGMLMVDNEPEVAGTSPSTTTGVNL
DTSLFIGGTVIELQDSIFKQTGVTKGLTGCISNIKVGEHGKKALSLSSQNTDAINTFRVA
ECSQSPCLPNPCRHTSKCFITYQLEEFTYKCDCGSRYYGDKCQHRTTTDTCASNPCHESS
TCVEDDNSYRCICPESRTGTQCTRLVADLPLPSTMEPSYMPMFAGDSYIQRPSLVGVGTK
LDIEIVFYTFQLEGLLFYNAQSDSGKGDFVALNLREGYLEFMYDLGEGPAIIKSTVKVSL
NEWHVAKLSRIMKIGDLKLDDGPIVKGVSPRSKAKHRHSQLNLGRPLYIGSVPESVTVPP
RTHITTGLMGAIQKFVVNDVELPRSLAGENSESYHIQAFNGHACYRQPCNNNGVCVPVLG
NFTCTCKTGYSGQLCQKVEKPEEIPMLQDSTPHAVFFDGRVKAQYNNFITRSGESEKIMK
KVNSLKSNHFELQLKTTAHHGLIFYDGKATKRGDYIALSVSYGRLHLTFDLGSGPANIVS
DLMVNDGLWKTVKIVRNEHRASLQIEEGTPKLASAPQLTKWLNTEGMLWLGGCEAEYMPP
RHRGLTKSFYMGFEGCIRRFRIDGNLLQLREDVLNRPGLATCQDR
NT seq
6258 nt
NT seq
+upstream
nt +downstream
nt
atgtccattgaaattcaaaaacgtttcacaatgtcgcgtaatcgatatacatcaaaatcg
ttatttcttgtaatatgcctgggacttttattttggtttgatattacggatggaagaaga
ataaaaagatccgttatgatgggaatgaacgataacattcaatgtatatctggaacaata
actgaaaggaatagttcgacgtctataatactcactgggaccgtaatagaatgcgataaa
atgagaccagataaatataactgccgtatacaggtttggcgatttatgaaaggaagaaaa
attgccggagaacttgtgaaaatacacgaagagaagattatgaaaaccacttatacaaaa
tcatatgtggaaatatttggattagggaatcctgcgttttgcgattctgaagtcaaagag
gacaaaacaaaaatattctttctgaatcgtgttgatgatcgtcttgtattggcagcctca
cttcttcatattactttgaagaacttagaaaacaccgaaaatgtcataaaaggaatgaaa
attgaggaggaacctaaaaagaaacaagacccgtgtctcatggttttgtgtggctttgaa
gcaaaatgtgaagcttcagcaaatggatctgccacctgtgtttgtcctaaagttacttgt
ggcaagtcgccagactcttccgatatctttgctccagtttgtggatcagatggagttact
tactccagtgaatgcagactgaaagcatctgaatgttggtcacagcgaagaattagaatt
gtttcacgaagaccttgcactccagtacaggaaaccgatccatgcaaaggtgtcacctgt
ggtaatatggcaaaatgtgttgtagtggatggtatgggaaaatgccaatgctattcttgt
gacaatgcaatgaccaagccagtatgtggttctgaccaaaaatcttaccgctcagaatgt
gacttgagacgggctgcatgcgaacattcccagagtctaaaagtcctcagacgagcacca
tgtgatccatgcgaagtttacaatgaaaaaaacaaatcatttgagcctttatgtgaggga
tcatgcagtttggatgttgaaggaaatcctcaatgctgtgattcaattgaatgtgaacca
tctagtgaagaaatgatggtgtgtggaagtgatggaagaacatacatgtcgaaatgtgca
ttacaaaaatattcttgtaaaattggaagagatatatcacaagtatctttgggatcttgt
ccatctccaagagaaacaacaattgtacaaggcagcacgagcatcgcagcagatgaaaaa
tgtccgggtaattgtgatgaatcctctccagactttattgctttcaaaagctctttcgaa
gaaaatgtcaacaagattctcgaaaggaagaacaaagctaatagtgatgcaggatctgta
acaaattttaaaattgaggaagtaagaagaggtagtgctgttttagtttacagtgctatg
atgacttggtctgatatgcccatcggtgaagattttgttcctggtcttgatacattgtgg
gcatttgaaagattgcatgatcctgcagtaggagcattgaaagaggcaattatttccatg
catgttactttggtcttgtacaagaaacctggggacgattttatggttcaagaggtttgt
ggaatgctacaatgtgagcatggtgcaagttgtatggtgacagaagacaatgctggaggt
ctggaacacagttgtgactgttccgctattggcaacgctgagcgtcttcctgtcacactt
ggatgcaaactagcaaacaacaaccgcttttatgataacaaggtcgcggtacgtcaagcg
tcttgcatgttgaggtctttcttcacattcagagacatttgtcgagttccacctaaaaat
ccgtgtgatgacatttcatgtgatggagatggaagtatgtgtattattactaatggagta
gcaagctgtgactgcgtaacatgctctgaaacatttgaacctgtctgtggatcaaacgaa
cagacttacaggagcatgtgtcacttaaatagggagaactgcattcgtggaacatctgta
actgtggcaagcaatggaatgtgtgcaagtcaatgtgatgaagttgattgcagacatgga
ggacaatgtgaggaattattgagagggtctgcattgtgtatttgcccatcatcgtgtatt
gaagtgtattcaccagtatgtggatcggatggtataacatatgaaaatgaatgtcgactt
tcaattgctgcttgcaataagaagatggacatatctgttctgaagatgatgccttgcaat
ggtactgaaagtataaaacctcctactgaggaagtggaggaaggatctggagaagaggga
tctggggaagatgactgtcattgtaaatttggagcaacctgtgatgaaactattgatgat
gaagatagaagttgcgtttgtgatattaaatgtgacagaatcggatcatgggtatgcgga
tccgatggaaaaacttatactgatgaatgtgaattgctcaaaacacaatgtgaaatgcaa
aaattaatcaaaattgcatcacaaggaagatgtgcggacttatgctcaaaatctgtattt
ggttgttgtgatgatggaattactcctgcgaaaggaagcagaaaggctggttgtccagaa
acatgcaagtgcaacgaacatggttcattttctccactctgtaatcacacaacagggcaa
tgtgtatgtagaccaggagttggaggtcagaaatgtgatcaatgccaaccaggattctgg
aatttccgtgccattgcggaaaagcgaagcattggatgcatggattgtagatgtgaaaag
ggaggctcagttcgagacgattgtgatcaaatgacaggacaatgtgtttgcaaagaagga
attacaggagttaaatgttcaaaatgtgaaaatggggaattagtcaccgacgaaggatgt
gtaggagcccatggaagagaaaccgctggttcctgtggagaattaaattgccgttttggc
caagaatgtgttgctcgatctgctgaatcaggattatacatgtgtcaatgtcccccatta
tcttcctgtgatacatatgctaatggcaagatttgtgcatcaaatggaataacatatgct
gatgaatgtcaaatggtagtagtagcatgcagagaatcaattgttcttaccgttatctct
gatggaacatgtagcgaatatttcaaatcaaaaaggcctgtggttccacctattgttaca
cccgcatccacaacggctcaacctgctactaccactactacatccaccgctagtacaact
atgtctactactactgcttccaccacttcaaaatcaactacaactagcttgactacccca
ggtataagcacagatatgaataaagtaactgattcaacgacaacaatcactactacaatg
acatcaacaatggccgtgaaaacaccagatcctgacttcgatattgatggcagtggtgat
ggtggtgaaaatactgatggtaatactacaattgatgatgaagatgataatgaaaatgaa
tcttccggagatgaaactgatgatattttccccactggtcatacagacgctcataatctg
gtgacaccagaatcaatgcgatcatatcaagtagaaacgaagttgaaatttcctaacaat
acagaaccaataaacatggatgatttgttgaaagatcctgaagaatatggggaaacaatt
acatcagtcttcactaggcttggtcttgttattgcgggattgccaggaagcagtccaata
gcactcacatctttgacaaatgctgccataaaacaaataaatactgaaggtatcgttgtc
acattccaaattgatgtttctgacaaatctgacctgaaagaactgcaaaattttataaat
gcaaatctggatgacggtgaaagttttatgttcattgattcaggttaccaaccacgcgag
ttctacaacgatgaaagtgcagacgtccttaagactgaaattctgaccaatcctgtcaaa
aaatctgtgtccgttcgaccagttgtaccacctttaaccaacttaatctatatggaagat
gatgaatggtcagtcccacaatttggtgggtcatcttacatggaattcaaaaagatgtct
gcatacagtgctgcaacaattcatatgacgttcaaatctgttgattcagaaggattgctt
ttgtataatggacaaaatacaggaagagatttcatctcacttgctattattggaggctat
gtggaatttagatttgatactggttctggcccattatcattgagaagtaacatacaagtt
aatgatggacaatggcatgaagtagtttcaagaagaaatagaagagaaggaatgttgatg
gtcgacaatgaaccagaagttgccggaacctcaccatcaacaacaactggtgttaactta
gatacaagcctatttattggtggaactgtcatagaactacaagacagtattttcaagcaa
actggggtaaccaaaggattgactggttgtatttctaatattaaagttggtgaacatggt
aaaaaggcattatcactatcatcacaaaatactgatgcaataaatacattcagggtggca
gaatgctcccaatcaccatgcttgccgaatccatgccgacatacctcaaaatgttttatc
acatatcagcttgaagaattcacttataaatgtgattgtggatcaagatattatggtgac
aaatgtcaacatcgcacaacaactgatacttgtgcttcaaatccatgtcacgaaagttca
acttgtgtagaagatgataattcatatagatgtatttgccctgaatcaagaactggaaca
cagtgtactcgattggttgcagatttgccattaccatctacaatggagccatcttatatg
ccaatgtttgctggtgactcgtatatccaacgaccatcattagttggtgtcggtacaaaa
cttgatattgagattgtattctatacattccagttagaaggactgctcttttataatgca
caatcagattcgggcaaaggagactttgttgcattaaatttaagagagggatatcttgaa
tttatgtatgatttgggtgaaggaccggcaatcataaagagcactgtcaaggtttcacta
aatgaatggcatgttgcaaaattgtctcgcattatgaagattggtgatcttaaattggat
gatggacccatcgttaaaggagtatcaccgagatcaaaggcaaagcaccgccattcccaa
cttaacctgggaagaccattatacattggctcagttcctgaatctgtgactgttcctcca
agaactcacataacgactggacttatgggagccattcaaaagtttgttgtgaatgatgtt
gaacttccgcgatcccttgctggagaaaattcagaatcgtatcacattcaagctttcaat
ggtcatgcctgctacagacaaccttgtaacaataatggagtctgtgtaccagtccttgga
aattttacctgcacatgcaaaactggatattcagggcaactttgtcaaaaagttgaaaag
cctgaagaaattccaatgcttcaagactcgacaccgcatgcagtattttttgatggaagg
gtcaaggcacaatataataacttcatcactaggagtggagaatctgaaaagatcatgaag
aaggtcaactcattaaaaagcaaccacttcgaacttcagttgaaaaccacagctcaccat
ggtttaatattttatgatggcaaagcaacaaaacgtggcgattacatagctttgtcagtt
agttatggcagactgcatttaacttttgatcttggatccggtccagccaatattgtatct
gatttaatggtaaatgatgggctatggaaaactgttaaaattgtcagaaatgaacatcga
gcatctctacaaatagaagaaggaactcctaaattagcatctgctccacaactcacaaaa
tggctaaatactgaaggaatgttatggcttggtggttgtgaagctgaatacatgccacct
aggcatcgaggactgaccaagtctttttatatgggatttgaaggatgcatccgtagattc
cgtattgatggaaatcttttacaattacgagaagatgtgttgaacagacccgggttagcc
acatgccaagaccggtga
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